Sequence
atgc intronic sequence ATGC exonic sequenceAGGTCCTCAGTGAAGCATTCGATGGCAAAAACAACAATGGGACTTGGGTTTATTTATTCATCGTCAGAAGATGAGGATGTCTGTCCAACATGTCTTGAAGgtaaaagtttataatatattttcctttttatgttgtagcaataaaactaaactatgctataaccttgatatgcaaacacagctaacccatgctgtaacct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0083g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os11g41140.1 (Oryza sativa), 5'ss of exon 3
AGGTCCTCAGTGAAGCATTCGATGGCAAAAACAACAATGGGACTTGGGTTTATTTATTCATCGTCAGAAGATGAGGATGTCTGTCCAACATGTCTTGAAGgtaaaagttta--taatatattttcctttttatgttgta-gcaataaaactaaactatgctataaccttgatatgcaaacacagcta-acccatgctgtaacct
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ACTCATGGAGAGAAGCTGCCAACAAAGGAACCTGGAAATTATTTCACATACTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGgtattaatctacttgtcatcagtatactagaatgacatatgtagttaatattacatatgcaattgtcttcata-gaatacttaatgagagtcatg-tgtact--
upper sequence: Vv14s0083g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G468260_T02 (Zea mays), 5'ss of exon 2
AGGTCCTCAGTGA-AGCATTCGATGGCAAAAACAACAATGGGACTTGGGTT-TATTTATTCATCGTCAGAAGATGAGGATGTCTGTCCAACATGTCTTGAAGgtaaaagtttataatatattttcctttttatgttgtagcaataaaa----ctaaactatgctataaccttgatatgcaaacacagctaacccatgctgtaacct
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--ACTTATGGTGATAAGGTGCCACCAAGGGAACATGGAAATTACTTCAGCTATTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgcaataatcatttttttctcttaagtgtattggaaagatgctctgatatttttcaaaacgctacagtaaaatttccattacataagactttg----
upper sequence: Vv14s0083g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G27730.1 (Glycine max), 5'ss of exon 3
AGGTCCTCAGTGAAGCATTCGATGGCAAAAACAACAATGGGACTTGGGTTTATTTATTCATCGTCAGAAGATGAGGATGTCTGTCCAACATGTCTTGAAGgtaaaagtttataatatattttcctttttatgttgtagcaataaaactaaactatgctataaccttgatatgcaaacacagctaacccat-gctgtaacct
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AAGTCCTCTGTAAGACTCTCATCAGCAAAACTTACAACTGGAGCTGGGGTTGTCTATTCATCCTCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGgtaagagtgttttttct-ttttttggccaatttcagaactgttgtaggaggatgttaggcaagaggaatcatctactgtagctaagccgttgctacggcac
upper sequence: Vv14s0083g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G50950.1 (Glycine max), 5'ss of exon 3
AGGTCCTCAGTGAAGCATTCGATGGCAAAAACAACAATGGGACTTGGGTTTATTTATTCATCGTCAGAAGATGAGGATGTCTGTCCAACATGTCTTGAAGgtaaaagtttataatatattttccttttta-tgttgtagcaataaaactaaactatgctataaccttgatatgcaaacacagctaacccatgctg--taacct
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-AGTCCACTGTAAGGCTCTCATCAGCAAAACTTACAACTGGAGCTGGGGTTGTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGGtaagagtgttttctctttttttttggctaatttcagagctgctatagcctatagcaggatggctgttatactgaaa-attatggatacaagctaaataact-
upper sequence: Vv14s0083g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G06840.1 (Glycine max), 5'ss of exon 2
AGGTCCTCAGTGAAGCATTCGATGGCAAAAACAACAATGGGACTTGGGTTTATTTATTCATCGTCAGAAGATGAGGATGTCTGTCCAACATGTCTTGAAGgtaaaagtttata-atatattttccttt-------ttatgttgtagcaataaaactaaactatgctataaccttgatatgcaaacacagctaacccatgctgtaacct
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AAGTCCTCACTAAGACTTCAATCAACAAAATATTCAACTGGAGTTGGTCTTGTCTATGCATCATCAGAGGAGGAGGATGTCTGTCCAACTTGTCTTGAAGgtagatatatatatattttttttatcttaataatcttatattttctacagaagacccattgataccaggagttacattttcaggaagtattgatctgtta--------
upper sequence: Vv14s0083g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G04340.1 (Glycine max), 5'ss of exon 3
AGGTCCTCAGTGAAGCATTCGATGGCAAAAACAACAATGGGACTTGGGTTTATTTATTCATCGTCAGAAGATGAGGATGTCTGTCCAACATGTCTTGAAGgtaaaagtttataatat-attttcct--ttttatgttgtagcaataaaactaaactatgctataaccttgatatgcaaacacagctaacccat-gctgtaacct
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AAGTCCTCCCTAAGACTTCAATCAACAAAATATTCAACTGGAGTGGGCCTTGTCTATGCATCATCAGAGGAGGAGGATGTTTGTCCAACTTGTCTTGAAGgtagagatatatatttttatcttaataatcttaaattttctgtagaagacccattgataccaggacataaattttcaggaagtattgatcttttattgta----
upper sequence: Vv14s0083g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G15790.2 (Arabidopsis thaliana), 5'ss of exon 3
AGGTCCTCAGTGAAGCATTCGAT-GGCAAAAACAACAATGGGACTTGGGTTTATTTATTCATCGTCAGAAGATGAGGATGTCTGTCCAACATGTCTTGAAGgtaaaagtttataatatattttcctttttatgttgtagcaataaaactaaactatgctataaccttgatatgcaaacacagctaacccatgctgtaacct
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-TCCTCTCGGAGGATTCTTCAGTCAAGGACAATGTCTACTAGTAACGAAGGCCTGTATATAACATCTGATGATGAAGATGTCTGTCCAACGTGTCTTGAAGgtattcattt-tcatctttttttttctttttcttggatcaatgcatttcaa-------agaagcttagtat-cagat-tatttcgtgtgttttgtag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708729|gb|FC060872.1|FC060872EST: TATTTATTCATCGTCAGATGATGAGGATGTCTGTCCAACATGTCTTGAAG AATATACTCCA
genomic: TATTTATTCATCGTCAGAAGATGAGGATGTCTGTCCAACATGTCTTGAAGgtaaaagttt ... ttttatgcagAATATACTCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGTCCTCAGTGAAGCATTCGATGGCAAAAACAACAATGGGACTTGGGTTTATTTATTCATCGTCAGAAGATGAGGATGTCTGTCCAACATGTCTTGAAGgtaaaagtttataatatattttcctttttatgttgtagcaataaaactaaactatgctataaccttgatatgcaaacacagctaacccatgctgtaacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaca