Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATCAAGATTGAGGGCTGTAGTTCTCCACAGCGCAATCTTGTCTGGACTTAGAGTCCTGTATCCAGTGAAACGGACATATTGGTTTGACATTTTCAAGgtttgcttgccttttaatgaattcaatggttatgtaagtttgaatttaacttaccactaatggcctatttatggtgcag

Basic information

species Vitis vinifera
transcript Vv14s0083g00800.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0083g00800.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G51140.1 (Glycine max), 5'ss of exon 3
GTTATCAAGATTGAGGGCTGTAGTTCTCCACAGCGCAATCTTGTCTGGACTTAGAGTCCTGTATCCAGTGAAACGGACATATTGGTTTGACATTTTCAAGgtttg---cttgccttttaatg---aattcaatggttatgtaagtt--tgaatttaacttaccactaatggcctatttatggtgcag------------------------------
 ||| |||   | ||||||||  ||||||||||  | ||||| ||||| ||| ||||| ||||||| || ||  ||||||| |||||||||||||  ||||||||     |  || | ||||   |||  | |||| |   |  ||  | ||||| | |   |||  ||    |     || ||||                               
TTTACCAAACCTTAGGGCTGTCATTCTCCACAGTCCCATCTTATCTGGTCTTCGAGTCATGTATCCTGTCAAGAGGACATACTGGTTTGACATTTATAAGgtttgatctctatctatcaatgctaaataaattggtcaatcagattcttcaatttgagtc-tcacatatatatttccattgctgcaatttaatgatgtctttctgccttttgtgcag

upper sequence: Vv14s0083g00800.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G04900.1 (Glycine max), 5'ss of exon 3
GTTATCAAGATTGAGGGCTGTAGTTCTCCACAGCGCAATCTTGTCTGGACTTAGAGTCCTGTATCCAGTGAAACGGACATATTGGTTTGACATTTTCAAGgttt-gcttgcctt---------ttaatgaat--tcaatggttatgta-agtttgaatttaacttaccactaatggcctatttatggtgcag
 |||||||   | ||||||||  ||||||||||  ||||||| ||||| ||| | ||| ||||||| || || || ||||| |||||||||||||  |||||||  | |   |          ||  |||||  | | |  | ||||  | |||  ||| |  |||  | || ||| ||  || || |||||
TTTATCAAACCTTAGGGCTGTGATTCTCCACAGTCCAATCTTATCTGGCCTTCGTGTCATGTATCCTGTAAAGCGCACATACTGGTTTGACATTTATAAGgttttacctttatcaatgctgaattggtgaatcataattcataatgttcaattttcattcattttaatattattggtcttcttttgatgcag

upper sequence: Vv14s0083g00800.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S123_154V6.1 (Physcomitrella patens), 5'ss of exon 3
GTTATCAAGATTGAGGGCTGTAGTTCTCCACAGCGCAATCTTGTCTGGACTTAGAGTCCTGTATCCAGTGAAACGGACATATTGGTTTGACATTTTCAAGgtttgct-------tgccttttaatgaattcaatggttatgtaagttt---gaattta-----acttaccactaatggccta--tttatg-gtgcag---
| || | ||  |  | | ||| || || |||||  ||||| | || |||||| ||||  |||| ||||||||||| || || ||||||||||||| |||||| ||||       |     ||| || |   |   || ||| | ||||    |||| |     | |  |  | || |   |   |||||  | ||||   
GCTACCCAGTCTTCGAGGTGTTGTACTTCACAGTCCAATCCTTTCCGGACTTCGAGTTATGTACCCAGTGAAACGCACGTACTGGTTTGACATTTACAAGgtatgctgatgaactattccttattgcagcaacacgtaatgcaggtttcacaaattcacacggaatctcttccaaagcttttattttatatgagcagacc