1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TACTTCTTCTTTACTTGCTTCTATCTGGACAGATGATGACAGAACTGGAATCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaagttaaaactcatcgcttcattcttacaattatagtcctttactatttcaggaattctgacgatggtcaaccacatgttgtggctaattcatagatgaaataatgaattttgattgctgattttgttggggaaaacag
species | Vitis vinifera |
transcript | Vv14s0083g00320.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGCAAGACAGCAGCAGAAGAAG-TTGCTTGGAGTAAEST: gi|110718836|gb|EE096125.1|EE096125
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACAGCAGCAGA-GAAGGTTGCTTGGAGTAA
EST: TCATTGATGAAAGTTGTTGGAGTGACNAGGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAGEST: gi|27580474|gb|CB003169.1|CB003169
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAG
EST: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAGEST: gi|110711942|gb|EE088999.1|EE088999
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAG
EST: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGNAGTAAGEST: gi|110711381|gb|EE087792.1|EE087792
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAG
EST: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGCAAGACAGCAACNNNNNNNGTTGCTTGGAGTAAGEST: gi|110710841|gb|EE087354.1|EE087354
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAG
EST: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAAGTTGCTTGGAGTAAGEST: gi|110730041|gb|EE106669.1|EE106669
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAG
EST: TCATTGATGAAAGTTGTTGGAGTGACGAAGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGCAAGACAGCAGCAAAGAAGGTTGCTTGGAGTAAGEST: gi|110729823|gb|EE106203.1|EE106203
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAG
EST: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGCAAGACAGCAACAAAGAAGGTTGCTTGGAGTAAGEST: gi|71863035|gb|DT012090.1|DT012090
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAG
EST: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGTAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAGEST: gi|110371210|gb|EC935047.1|EC935047
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAG
EST: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAGEST: gi|161717840|gb|FC066608.1|FC066608
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAG
EST: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAGEST: gi|161718910|gb|FC068628.1|FC068628
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACAGCAGCAGAGAAGGTTGCTTGGAGTAAG
EST: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAG CTTTGGCTTGCTATGGGCAAGACA
genomic: TCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaa ... gggaaaacagCTTTGGCTTGCTATGGGCAAGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTTCTTCTTTACTTGCTTCTATCTGGACAGATGATGACAGAACTGGAATCATTGATGAAAGTTGTTGGAGTGACGAGGAATTCTGCAGAGACAGAAAGgtacttcaaagttaaaactcatcgcttcattcttacaattatagtcctttactatttcaggaattctgacgatggtcaaccacatgttgtggctaattcatagatgaaataatgaattttgattgctgattttgttggggaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG