Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcag

Basic information

species Vitis vinifera
transcript Vv14s0081g00010.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g53150.1 (Oryza sativa), 5'ss of exon 3
ATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaattt---gaatcag-------------------
    || |||  |||  ||  |   ||| || || |||   ||  | |||||||||||||| ||||| |||||||||||||||||||| || || ||| |||| ||||| || ||      | |   ||   |||| |  ||||      || || |   | ||      ||     | |   || |  | ||  | |||   | || ||                   
---GGAACAATATGAATGAGGT---GAATGGCTCTGATGCTGTTACAACTTATGAAGACAAGGATGGTGACTGGATGCTTGTTGGAGATGTCCCGTGGCAgtatgttactac-ttcattcttgtgcccc--cttaactgttttccttattttccacctcatgattag--aatgcggtttagcgataccacgttcaagtttctcgcattagctgattggttactctgcag

upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G159285_T01 (Zea mays), 5'ss of exon 3
ATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcag---
||||| | ||| |  | ||||   | | |||| | |||   ||  ||||||| |||||||| ||||| ||||||||||| ||||| ||||| || |||||||| ||| |  ||||  |   |    ||   |   | ||| |    ||||  |  |   | |  |   || || |  ||  |  | | |  |||    |||   | |   
ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgtt-ctgcattctagtgtgccatcatctaggatttgatc---aggcaaatgt---tcaggcttcagcttcttata--tgctgccttgttgattgttgtccctgcag

upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G077356_T01 (Zea mays), 5'ss of exon 3
ATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTG---CCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaa----ttaatccttctttggaatttgaatcag
   || | | |||| | ||||       || | | ||| | |||    ||||||| |||||||| ||||| ||||||||||| || || ||||| || |||||||| ||| |  | ||  |   |    ||   |         || |  | |  |     |  | ||||  |  ||   |      ||  |  || | |||    || |    
---AGGGGAGATTGGTTGATCCGGCCGGCGATGCTGATGATGTGGTCACTACTTACGAAGACAAGGATGGTGACTGGATGCTGGTCGGCGACGTCCCGTGGGAgtatgtt-ctccgttctagcgtgccatcgtctgctttcgtatttactgacccatgattaggactccagtgtcttgtatgtcgccttgctgattttctggtccctgcag---

upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G40760.1 (Glycine max), 5'ss of exon 2
ATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttac-taattaatccttctttggaatttgaatcag
| |||||||||||||| |||||| | ||||| || |||||||| || || ||||||||||||||||  ||||||||||| ||||| ||||| || |||||||||||    ||  ||    || | |   |    | |     ||      |||     |  | | | | ||||  || | | ||||     | |  ||||| |  |||
ACGAGAGCAAATTGATTGATCTTCTCAACGGCTCTGATTACGTACCAACCTATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctggaccatt----atttctctaagcacacaccacatccttaa-ttattaggaccatttc-tcgattaaacattactaatttggatatataatttca--cag

upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G30440.3 (Glycine max), 5'ss of exon 2
ATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcag
|||||| ||||||||| || ||||||||||| || ||||| || || |||||| ||||||| || |||||||||||||| || || |||||||| ||||||| |||| |  |  ||      |||  |  ||||   || ||       ||| | | | || |||  |   || ||||| |     ||| ||   ||||| |  |||
ATGAGACCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTACCCACTTATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccccctctt-----cattcccttatttcccttttt-------ctttctttagtttatcattcccttatactact-----ctttttcacaatttca--cag

upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G43450.1 (Glycine max), 5'ss of exon 2
ATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttgga-atttgaatcag---
| ||| |||||||||| |||||| | ||||| || |||||||| || || | ||||||||||||||| || |||||||| || || ||||| || |||||||||||       |||  || || ||| |  ||||| ||  |  ||  ||  ||| ||  |  | |||   ||| | |||  | | ||  | |||| || | | ||     
ACGAGGGCAAATTGATTGATCTTCTCAACGGCTCTGATTACGTACCAACCTGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGACGTACCTTGGGAgtaagtc------tttatcattaatttgc--tttaattttctctaa--gcacacaccacctgtttcat---tttaattaaacattactaatatggatatataattccacag

upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G04730.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcag
||||||| ||||||||||||||| | ||||| || ||||| || || || |||||||| |||||||| |||||||||||||| |||||||| || ||||||| |||    |  |||    |||| ||  ||||||   | | | ||    |   || |||   || ||| |   || | ||| |    |  || | | |    | ||
ATGAGAGTAAATTGATCGATCTTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGATGGCGACTGGATGCTTGTAGGAGACGTACCGTGGGAgtgagt----attttt----atatctttaaattta---tatatgaattattattataaatacgtctatacaaaatatttatttacatgttgtttggact-attttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110370217|gb|EC929130.1|EC929130
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|34363463|gb|CF405048.1|CF405048
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110386441|gb|EC951035.1|EC951035
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110357652|gb|EC921294.1|EC921294
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110357044|gb|EC920312.1|EC920312
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTTGCA-GCGCTTGCGCATAATGAAAGGATCCGAGG
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTT-GCAAGCGCTTGCGCATAATGAAAGGATCCGAGG
EST: gi|110358344|gb|EC922490.1|EC922490
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|34319372|gb|CF372126.1|CF372126
EST:     AGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: AGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|30321834|gb|CD005096.1|CD005096
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110382415|gb|EC939426.1|EC939426
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|30125491|gb|CB910830.1|CB910830
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110421032|gb|EC987319.1|EC987319
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110370114|gb|EC934294.1|EC934294
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110387706|gb|EC952397.1|EC952397
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110359936|gb|EC922298.1|EC922298
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110395704|gb|EC961374.1|EC961374
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|30129712|gb|CB915051.1|CB915051
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110389158|gb|EC953976.1|EC953976
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|32245124|gb|CD710943.1|CD710943
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110359422|gb|EC920879.1|EC920879
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110685024|gb|EE062971.1|EE062971
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATTNATGAAAG-ATTCGAGG
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATA-ATGAAAGGATCCGAGG
EST: gi|45771409|gb|CN007261.1|CN007261
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110360880|gb|EC924322.1|EC924322
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110421723|gb|EC988023.1|EC988023
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110726327|gb|EE102012.1|EE102012
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110357840|gb|EC921623.1|EC921623
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110424930|gb|EC991305.1|EC991305
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|18459524|gb|BM437802.1|BM437802
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110359559|gb|EC921247.1|EC921247
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|71874129|gb|DT023184.1|DT023184
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110357411|gb|EC920932.1|EC920932
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGGCA-GCGCTTGCGCATAATGAAAGGATCCGAGG
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTG-CAAGCGCTTGCGCATAATGAAAGGATCCGAGG
EST: gi|110685504|gb|EE062284.1|EE062284
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|22010332|gb|BQ795366.1|BQ795366
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|18458727|gb|BM437005.1|BM437005
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|26258642|gb|CA809705.1|CA809705
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|34414970|gb|CF413724.1|CF413724
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|18459647|gb|BM437925.1|BM437925
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCT
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCT
EST: gi|110703290|gb|EE080007.1|EE080007
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA