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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACAGTTGGCCAGTGTAGGGTACCATTTGGTGAGCTTCCGAGAGGGGTTATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGgtagtttccatttagtcttaaaagttaatacattgtatgccttcctggatactagctttttgttgaggacttgatttctctatgtgctttctgctgtttg...

Basic information

species Vitis vinifera
transcript Vv14s0068g01590.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349824017|gb|FQ417404.1|FQ417404
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAG                         AAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCACAT
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGgtagtttcca ... gtctgagcagAAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
EST: gi|351019132|gb|FQ429292.1|FQ429292
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAG                         AAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGgtagtttcca ... gtctgagcagAAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
EST: gi|30128569|gb|CB913908.1|CB913908
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGG                         T
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACA-Ggtagtttcca ... gtctgagcag-
EST: gi|30128569|gb|CB913908.1|CB913908
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGG                         T
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACA-Ggtagtttcca ... gtctgagcag-
EST: gi|30128569|gb|CB913908.1|CB913908
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGG                         T
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACA-Ggtagtttcca ... gtctgagcag-
EST: gi|349825492|gb|FQ419409.1|FQ419409
EST:     TATCACCATGCATGTTGTTGTGCGGCCATCTTTAGCGAAAGCAAAAACAG                         AAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGgtagtttcca ... gtctgagcagAAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
EST: gi|351022173|gb|FQ438758.1|FQ438758
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAG                         AAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGgtagtttcca ... gtctgagcagAAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
EST: gi|349832921|gb|FQ423043.1|FQ423043
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAG                         AAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGgtagtttcca ... gtctgagcagAAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
EST: gi|22012147|gb|BQ797181.1|BQ797181
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAG                         AAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGgtagtttcca ... gtctgagcagAAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
EST: gi|30125968|gb|CB911307.1|CB911307
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGG                         T
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACA-Ggtagtttcca ... gtctgagcag-
EST: gi|30125968|gb|CB911307.1|CB911307
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGG                         T
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACA-Ggtagtttcca ... gtctgagcag-
EST: gi|30125968|gb|CB911307.1|CB911307
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGG                         T
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACA-Ggtagtttcca ... gtctgagcag-
EST: gi|30129907|gb|CB915246.1|CB915246
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGG                         T
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACA-Ggtagtttcca ... gtctgagcag-
EST: gi|30129907|gb|CB915246.1|CB915246
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGG                         T
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACA-Ggtagtttcca ... gtctgagcag-
EST: gi|30129907|gb|CB915246.1|CB915246
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGG                         T
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACA-Ggtagtttcca ... gtctgagcag-
EST: gi|351021618|gb|FQ430505.1|FQ430505
EST:     TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAG                         AAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT
genomic: TATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGgtagtttcca ... gtctgagcagAAAAGAAGGTCGATGAGGCCCCAAAGAAAAATGTTTGTTCATGTTCCATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGACAGTTGGCCAGTGTAGGGTACCATTTGGTGAGCTTCCGAGAGGGGTTATCACCATGCATGTTGTTGTGCAGCCATCTTTAGCGAAAGCAAAAACAGgtagtttccatttagtcttaaaagttaatacattgtatgccttcctggatactagctttttgttgaggacttgatttctctatgtgctttctgctgtttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA