Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATCACATGCTTTTGAATTGGAGTCCAAAGTGGAAGGAATGTTTTATGGTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacattttttatttatgatttgtttctcgtttcatgtgaagaatttctaatctcttgacttttgcctgtttttag

Basic information

species Vitis vinifera
transcript Vv14s0068g01370.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30251139|gb|CB968872.1|CB968872
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATCCAACTCCAATATTACCTTTACATATCCTTGCAGTGAAACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110407404|gb|EC973004.1|EC973004
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|87585747|gb|DY474339.1|DY474339
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|34363305|gb|CF404890.1|CF404890
EST:     AGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: AGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110382813|gb|EC947134.1|EC947134
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110376298|gb|EC941352.1|EC941352
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110371863|gb|EC935989.1|EC935989
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110373566|gb|EC937815.1|EC937815
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|71879754|gb|DT028809.1|DT028809
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|33405737|gb|CF211364.1|CF211364
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|351030153|gb|FQ432091.1|FQ432091
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|32245743|gb|CD711562.1|CD711562
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110388232|gb|EC952964.1|EC952964
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110687596|gb|EE065188.1|EE065188
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|32246370|gb|CD712189.1|CD712189
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110411139|gb|EC976842.1|EC976842
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110405506|gb|EC971047.1|EC971047
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110380319|gb|EC945574.1|EC945574
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110419233|gb|EC985445.1|EC985445
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110405188|gb|EC970724.1|EC970724
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|161720207|gb|FC070859.1|FC070859
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|30130026|gb|CB915365.1|CB915365
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|349826447|gb|FQ418538.1|FQ418538
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110363176|gb|EC926748.1|EC926748
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGTTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110411243|gb|EC976950.1|EC976950
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110384356|gb|EC948786.1|EC948786
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110418411|gb|EC984564.1|EC984564
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|37189753|gb|CF609102.1|CF609102
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|33407318|gb|CF212945.1|CF212945
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|351047206|gb|FQ454817.1|FQ454817
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|71859044|gb|DT008099.1|DT008099
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110411649|gb|EC977370.1|EC977370
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110379929|gb|EC945156.1|EC945156
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110687156|gb|EE064330.1|EE064330
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110415005|gb|EC980873.1|EC980873
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|27586271|gb|CB008966.1|CB008966
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110378436|gb|EC943568.1|EC943568
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110688620|gb|EE067380.1|EE067380
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|33407407|gb|CF213034.1|CF213034
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110695647|gb|EE073904.1|EE073904
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
EST: gi|110390154|gb|EC955048.1|EC955048
EST:     GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAG                         GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT
genomic: GTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacatt ... ctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTATCACATGCTTTTGAATTGGAGTCCAAAGTGGAAGGAATGTTTTATGGTGCACCAGCAGTCATTACATTCCGCATCCCTACCACGGCTGCTCTGCAGgtttgacattttttatttatgatttgtttctcgtttcatgtgaagaatttctaatctcttgacttttgcctgtttttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG