1 5' 3' | 2 5' 3' | 3 5' 3' |
CTCAAATCTGACCTCCTTGAACCTGAGTTATGCTCCAGGGATTCATGGAGATGAGCTGATAAAGCTAATCCGCTACTGCAGGAAACTTCAGCGACTGTGGgtatgaacttttaacccaactctagcctctgaaagcaatactctttttattgaaatgtatgacaagttcccatgatttatgcag
species | Vitis vinifera |
transcript | Vv14s0068g01330.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGAGCTGATAAAGCTAATCCACCACTGCAGGAAACTTCAGCGACTGTGG ATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGTEST: gi|22010853|gb|BQ795887.1|BQ795887
genomic: ATGAGCTGATAAAGCTAATCCGCTACTGCAGGAAACTTCAGCGACTGTGGgtatgaactt ... atttatgcagATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGT
EST: ATGAGCTGATAAAGCTAATCCACCACTGCAGGAAACTTCAGCGACTGTGG ATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGTEST: gi|71861101|gb|DT010156.1|DT010156
genomic: ATGAGCTGATAAAGCTAATCCGCTACTGCAGGAAACTTCAGCGACTGTGGgtatgaactt ... atttatgcagATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGT
EST: ATGAGCTGATAAAGCTAATCCACCACTGCAGGAAACTTCAGCGACTGTGG ATATTGGATTGCATTGGAGEST: gi|110705852|gb|EE083178.1|EE083178
genomic: ATGAGCTGATAAAGCTAATCCGCTACTGCAGGAAACTTCAGCGACTGTGGgtatgaactt ... atttatgcagATATTGGATTGCATTGGAG
EST: ATGAGCTGATAAAGCTAATCCACCACTGCAGGAAACTTCAGCGACTGTGG ATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGTEST: gi|110686606|gb|EE064438.1|EE064438
genomic: ATGAGCTGATAAAGCTAATCCGCTACTGCAGGAAACTTCAGCGACTGTGGgtatgaactt ... atttatgcagATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGT
EST: ATGAGCTGATAAAGCTAATCCGCTACTGCAGGAAACTTCAGCGACTGTGG ATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGTEST: gi|110707279|gb|EE083551.1|EE083551
genomic: ATGAGCTGATAAAGCTAATCCGCTACTGCAGGAAACTTCAGCGACTGTGGgtatgaactt ... atttatgcagATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGT
EST: ATGAGCTGATAAAGCTAATCCACCACTGCAGGAAACTTCAGCGACTGTGG ATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGTEST: gi|110359076|gb|EC919958.1|EC919958
genomic: ATGAGCTGATAAAGCTAATCCGCTACTGCAGGAAACTTCAGCGACTGTGGgtatgaactt ... atttatgcagATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGT
EST: ATGAGCTGATAAAGCTAATCCACCACTGCAGGAAACTTCAGCGACTGTGG ATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGT
genomic: ATGAGCTGATAAAGCTAATCCGCTACTGCAGGAAACTTCAGCGACTGTGGgtatgaactt ... atttatgcagATATTGGATTGCATTGGAGACAAGGGACTAGGAGTTGTCGCTTGTACTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAAATCTGACCTCCTTGAACCTGAGTTATGCTCCAGGGATTCATGGAGATGAGCTGATAAAGCTAATCCGCTACTGCAGGAAACTTCAGCGACTGTGGgtatgaacttttaacccaactctagcctctgaaagcaatactctttttattgaaatgtatgacaagttcccatgatttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG