Sequence
atgc intronic sequence ATGC exonic sequenceGCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGGgtctgcctcttagcccaagaccttattttatgcactcatttagttttatgttaaaatgctgatttgctttttcttttctgtttccttcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01150.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G27570.2 (Glycine max), 5'ss of exon 3
GCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGGgtctgcctcttag-----cccaagaccttatt--ttatgcactcatttagttttatgttaa------aatgctgatttgctttttcttttctgtttccttcacag------
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GATAACAGGGGGCTTGGACTCACTGCACATATTATTGATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttccattaataaccaattgctgattttttgtttacttttcaatgtttggataattgcag
upper sequence: Vv14s0068g01150.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 3
GCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGGgtctgcctcttagcccaagaccttattttatgcactcatttagttttatgttaaaatgctgatt-tgctttttcttttctgtttccttcacag
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GCTAACAGAGGGCTTGGACTCTCTGCCCATATTATCGATCACTGTAATCTTATCCTCAAGTTCCCTGAAGGCACTAACAGTACTTGGgtatgtttacacttgtctggtttctttttgagatttcattggttttattgtgatcaagttttttacacttgcattcttatctttcaatgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352782343|gb|FQ470246.1|FQ470246EST: ACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGG TTCAATACACAATTTAAAAAATTTGAAGCCTTGGAATACAGTTATGATGTT
genomic: ACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGGgtctgcctct ... tccttcacagTTCAATACACAATTTAAAAAATTTGAAGCCTTGGAATACAGTTATGATGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGGgtctgcctcttagcccaagaccttattttatgcactcatttagttttatgttaaaatgctgatttgctttttcttttctgtttccttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG