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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTGCATAAGCCTGGCAAGCGTTGGCCTTGTTCTTACCATAACTTTTCCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctgacaaacacacactatttcactatatatacatatatcatgtgctaattatttgagaatggaaaacag

Basic information

species Vitis vinifera
transcript Vv14s0068g01020.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G07350.1 (Glycine max), 5'ss of exon 3
GCACTTGCATAAGCCTGGCAAGCGTTGGCCTTGTTCTTACCATAACTTTTCCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctgaca------------aacacacactatttcactatatatacatatatca----tgtgctaattatttgagaatggaaaacag----------------------------------------------
|||||||||| ||| ||||||| || |  ||||| ||||||||||| || || ||||||||||| |||||||| ||| ||||||| |  ||||| || ||||||||| | |||            |  ||||   | || | | |  ||    ||||      |||| |  |  ||||||| |    |   |                                              
GCACTTGCATCAGCTTGGCAAGTGTGGCACTTGTGCTTACCATAACCTTCCCAGATGTTGGCAACAACTGGTTTTGGATCACCATCTCGAGTCCATTGGCgtaagtgattacactgaaaattaacattacaccacactttattttccatttcaatatggccattgtgtttttgttttgagagttactatttgttgtcatgttatgcttatactaaaatacattggggggttaatgcag

upper sequence: Vv14s0068g01020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G26340.1 (Glycine max), 5'ss of exon 3
GCACTTGCATAAGCCTGGCAAGCGTTGGCCTTGTTCTTACCATAACTTTTCCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctgac-----aaacacacactatttcactatatatacatatatcatgtgctaatta--tttgagaatggaaaacag-------------------------------------------------------------------
|||||||||| ||| ||||||| || |  ||||| |||||||||||  | || ||||||||||| |||||||| ||| ||||| | || ||||| || ||||||||| |  |     |||   ||| ||   |||  ||| | | | |    |||| | |||   |||  |  | ||     |                                                                   
GCACTTGCATCAGCTTGGCAAGTGTGGCACTTGTGCTTACCATAACCGTACCAGATGTTGGCAACAACTGGTTTTGGATCACCCTCTTGAGTCCATTGGCgtaagtgatcccactgaaaatttacattacaccacactattttccttttcattgtggttattgtgtttttgttttgagggaggtttaggtgagagttactattattgtcttgttatgctgatactcgaaatacattgggatttaacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349819952|gb|FQ404674.1|FQ404674
EST:     CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGC                         CGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
genomic: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctg ... tggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
EST: gi|110391819|gb|EC956821.1|EC956821
EST:     CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATCTTAAGTCCTTTAGC                         CGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
genomic: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctg ... tggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
EST: gi|26258582|gb|CA809645.1|CA809645
EST:     CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATCTTAAGTCCTTTAGC                         CGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
genomic: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctg ... tggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
EST: gi|26257822|gb|CA808885.1|CA808885
EST:     CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATCTTAAGTCCTTTAGC                         CGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
genomic: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctg ... tggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
EST: gi|349823416|gb|FQ423227.1|FQ423227
EST:     CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGC                         CGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
genomic: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctg ... tggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA