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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATATACCTTGGGAAGCCTGACGGGCCTACTTGCCACACTGGATCTGAAACTTGCTATTATTCATCAGTATTTGATTTGTTAAAAAATCCTCAGgtttatattcctttcttttatggtattctttttgttttgtttttctttagtaggaagaacaataattttttcccagccctactttggacatgctttatattaattttttgttgcag

Basic information

species Vitis vinifera
transcript Vv14s0068g00910.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g16940.1 (Oryza sativa), 5'ss of exon 3
ATAATATACCTTGGGAAGCCTGACGGGCCTACTTGCCACACTGGATCTGAAACTTGCTATTATTCATCAGTATTTGATTTGTTAAAAAATCCTCAGgtttatattcctttcttttatggtattctttttgttttgtttttctttagtaggaagaacaataattttttcccagccctactttggacatgctttatattaattttttgttgcag
|||||||||||||||||||| || |||||||||||||| || ||  | || ||||| || ||| | ||||| | ||||    || ||  | |  |||| | | ||| |   ||    |   ||  | |   |     |||   ||  |   |        | |  ||| |||                                        
ATAATATACCTTGGGAAGCCAGATGGGCCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGgtatctgttcttgggtt----gccctttctgtaaatgaacctttacatataatttaactatgagactccttcacag----------------------------------------

upper sequence: Vv14s0068g00910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G05140.1 (Glycine max), 5'ss of exon 5
ATAATATACCTTGGGAAGCCTGACGGGCCTACTTGCCACACTGGATCTGAAACTTGCTATTATTCATCAGTATTTGATTTGTTAAAAAATCCTCAGgtttatattcctttcttttatggtattctttttgttttgtttttctttagtaggaagaacaataattttttcccagccctactttggacatgctttatattaattttttgttgcag
||||||||||| || || ||||| |||||||| |||||||| ||  | ||||| ||||||||| ||||||| ||||| ||||||||  | |   ||||    | | |  ||  |||||    | || |||  ||| |||  ||||| || |||  ||  ||| ||    |||      || ||  ||   ||| |                 
ATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAAACATGCTATTATACATCAGTTTTTGACTTGTTAAAGCAGCAAGAGgta---acttcaatcaattatgaacatattattgccttgctttcatttag-agaaagttcagcaatatt----cagattggtttgggttatctattacag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110382332|gb|EC939187.1|EC939187
EST:     CTGAAACTTGCTATTATTCATCAGTATTTGATTTGTTAAAAAATCCTCAG                         GGTGAAGAGAGTAACAATTTGGCATTAACGACATTGTACTCTTTAGAATCC
genomic: CTGAAACTTGCTATTATTCATCAGTATTTGATTTGTTAAAAAATCCTCAGgtttatattc ... tttgttgcagGGTGAAGAGAATAACAATTTGGCATTAACGGCATTGTACTCTTTAGAATCC
EST: gi|351017321|gb|FQ435673.1|FQ435673
EST:     CTGAAACTTGCTATTATTCATCAGTATTTGATTTGTTAAAAAATCCTCAG                         GGTGAAGAGAATAACAATTTGGCATTAACGGCATTGTACTCTTTAGAATCC
genomic: CTGAAACTTGCTATTATTCATCAGTATTTGATTTGTTAAAAAATCCTCAGgtttatattc ... tttgttgcagGGTGAAGAGAATAACAATTTGGCATTAACGGCATTGTACTCTTTAGAATCC
EST: gi|351015089|gb|FQ444378.1|FQ444378
EST:     CTGAAACTTGCTATTATTCATCAGTATTTGATTTGTTAAAAAATCCTCAG                         GGTGAAGAGAATAACAATTTGGCATTAACGGCATTGTACTCTTTAGAATCC
genomic: CTGAAACTTGCTATTATTCATCAGTATTTGATTTGTTAAAAAATCCTCAGgtttatattc ... tttgttgcagGGTGAAGAGAATAACAATTTGGCATTAACGGCATTGTACTCTTTAGAATCC