Sequence
atgc intronic sequence ATGC exonic sequenceTTTGACAAACCCAAAGGCTGGATTCTATATTAACCGGGATGTGTTTGGAACAGAAGGTGATTTCATCACCTCTCCTGAAGTGAGCCAGATGTTTGGGGAGgtaatttgattgctgttgaatgcttaattgttatattttcttataatttgttgagtagattcaaggagtaagggaagttttatttatgccaaagatctgttcaactttggtattctgttgctttgattctcactacctcaagagtttatcactagagaatgttttcatttttcttgctgattccacttttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g02600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G086052_T03 (Zea mays), 5'ss of exon 3
TTTGACAAACCCAAAGGCTGGATTCTATATTAACCGGGATGTGTTTGGAACAGAAGGTGATTTCATCACCTCTCCTGAAGTGAGCCAGATGTTTGGGGAGgtaatttgattgctgttgaatgcttaattgttatattttcttataatttgttgagtagattcaaggagtaagggaagttttatttatgccaaagatctgttcaactttggtattctgttgctttgattctcactacctcaagagtttatcactagagaatgttttcatttttcttgctgattccacttttag
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GCTGACGAACCCACAGTCAGGATTCTACATCAACCGTGACGTGTTTGGGGAATCAGGGGATTTCATCACCTCGCCAGAGGTCAGCCAGATGTTTGGAGAGgtaa---aactggtgctcactaatcaattgctttgtcaacac-tagtgtgaagaacattgcactgtgctgtatttagttat-ttaatcacgatccagtaatgaac---------------------------------------------------------------------------------------
upper sequence: Vv14s0066g02600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G10540.1 (Glycine max), 5'ss of exon 3
TTTGACAAACCCAAAGGCTGGATTCTATATTAACCGGGATGTGTTTGGAACAGAAGGTGATTTCATCACCTCTCCTGAAGTGAGCCAGATGTTTGGGGAGgtaatttgattgctgttgaatgcttaattgttatattttcttataatttgttgagtagattcaaggagta-agggaagttttatttatgccaaagatctgttcaactttggtattctgttgctttgattctcactacctcaagagtttatcactagagaatgttttcatttttcttgctgattccacttttag
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TTTGACAAATCCTAAAGCTGGTTATTACATCAATCGAGATGTTTTTGGAGCAGAAGGTGATTTTATCACCTCACCTGAAGTTAGCCAGATGTTTGGTGAGgtgaggtga-----agtgaattatccatt----tatttaactatg-tctgttgt-tgggggcatgaactagagttaaagcttgtcaatgccataaggattcaaatatttaacaccttgttgttt--atttaaacttag-------------------------------------------------------
upper sequence: Vv14s0066g02600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G28700.2 (Arabidopsis thaliana), 5'ss of exon 3
TTTGACAAACCCAAAGGCTGGATTCTATATTAACCGGGATGTGTTTGGAACAGAAGGTGATTTCATCACCTCTCCTGAAGTGAGCCAGATGTTTGGGGAGgtaatttgattgctgttgaatg-cttaattgttatattttcttataatttgttgagtagattcaaggagtaagggaagttttatttatgccaaagatctgttcaactttggtattctgttgctttgattctcactacctcaagagtttatcactagagaatgttttcatttttcttgctgattccacttttag
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TTTGACTAATCCTAAAGCAGGATTCTATATGAATCGTGATGTTTTTGGAGCTCAAGGTGATTTCATTACTTCTCCAGAAGTTAGCCAAATGTTCGGCGAGgtgatttacttggcgtttgttgatttgagagttatgcatttgtgt--tttggttctatgtttgagcttgagattgaagttttgttactttgtgttgtgatcttag----------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110702770|gb|EE079032.1|EE079032EST: CAGAAGGTGATTTCATCACCTCTCCTGAAGTGAGCCAGATGTTTGGGGAG ATGATTGGTGTTTGGGTTACGTGTCTGTGGGAGCAAATGGGTCAACCAAGT
genomic: CAGAAGGTGATTTCATCACCTCTCCTGAAGTGAGCCAGATGTTTGGGGAGgtaatttgat ... ccacttttagATGATTGGTGTTTGGGTTATGTGTCTGTGGGAGCAAATGGGTCAACCAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGACAAACCCAAAGGCTGGATTCTATATTAACCGGGATGTGTTTGGAACAGAAGGTGATTTCATCACCTCTCCTGAAGTGAGCCAGATGTTTGGGGAGgtaatttgattgctgttgaatgcttaattgttatattttcttataatttgttgagtagattcaaggagtaagggaagttttatttatgccaaagatctgttcaactttggtattctgttgctttgattctcactacctcaagagtttatcactagagaatgttttcatttttcttgctgattccacttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG