1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCTCGGCCAATGATGAAGAATTCGGCGTACAGgtaatatcaagacaatgccatggcttcattttcttgtttaaaggacttgaaacagtctcttttgagccctcaaaacttattatcgtgtcaaacttgacaaatttgttttacag
species | Vitis vinifera |
transcript | Vv14s0066g01790.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCTCGGCCAATGATGAAGAATTCGGCGTACAG GCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCTEST: gi|110688487|gb|EE067095.1|EE067095
genomic: GTCTCGGCCAATGATGAAGAATTCGGCGTACAGgtaatatcaa ... tgttttacagGCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
EST: GTCTCGGCCAATGATGAAGAATTCGGCGTACAG GCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCTEST: gi|110710595|gb|EE087096.1|EE087096
genomic: GTCTCGGCCAATGATGAAGAATTCGGCGTACAGgtaatatcaa ... tgttttacagGCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
EST: GTCTCGGCCAATGATGAAGAATTCGGCGTACAG GCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCTEST: gi|110686807|gb|EE064863.1|EE064863
genomic: GTCTCGGCCAATGATGAAGAATTCGGCGTACAGgtaatatcaa ... tgttttacagGCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
EST: GTCTCGGCCAATGATGAAGAATTCGGCGTACAG GCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
genomic: GTCTCGGCCAATGATGAAGAATTCGGCGTACAGgtaatatcaa ... tgttttacagGCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCGGCCAATGATGAAGAATTCGGCGTACAGgtaatatcaagacaatgccatggcttcattttcttgtttaaaggacttgaaacagtctcttttgagccctcaaaacttattatcgtgtcaaacttgacaaatttgttttacag
- - - - - - - TGAAGA