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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGCAGATGGGGAATATAACGATCCCTTCAATGACGATGCAGGCAGCCAAGGCACCTTCTTTGGCCGGAACATTCTCCCTGTCGATCAGAAAGATAAGgtagctggtaattccttgcatatatcttggtgatggcctttattttaattgaattcatacatgtatgtag

Basic information

species Vitis vinifera
transcript Vv14s0066g01690.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 2
GACGGCAGATGGGGAATATAACGATCCCTTCAATGACGATGCAGGCAGCCAAGGCACCTTCTTTGGCCGGAACATTCTCCCTGTCGATCAGAAAGATAAGgt-------agctggtaattccttgcatatatcttggtgatggcctttattttaattgaattcatacatgtatgtag-----------------------
 || || |||||  ||||||| || |||||||| || | | | |||||||| || || ||||||||| | |||||||||||||| ||||||||| | |||||       | ||  | | |   |     ||| |   | ||    ||  ||| |  | | | |  | || ||  |                         
AACAGCTGATGGAAAATATAATGACCCCTTCAACGAAGTTTCTGGCAGCCACGGAACTTTCTTTGGCAGAAACATTCTCCCTGTGGATCAGAAAAAAAAGgtccacaataactaattaatatctcagcctatatattttataaatttcttttaatatcagtcctaaaatatagctgattattcaactaactaaaagtgaa