Sequence
atgc intronic sequence ATGC exonic sequenceAGATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCGTCTTGGATTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccatttaagatcaacttcttacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatatctttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g26290.6 (Oryza sativa), 5'ss of exon 4
AGATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCGTCTTGGATTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccatttaagatcaacttcttacttgaaatagaatttaat--ttaatattcaagaatgagattataataatt--atgaatctatggtctgaatatctttgtag
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AGAATACAAGGACACAGGGAAACAGTTCAATATACTAGCAGCTGCATGGATACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgt---gcatgcttgatttaattccttaatttgag-agccttaagttgttgaagtcttaaaattaaatcttcatcttccattgagattttgaaatatatattgta----
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G312997_T01 (Zea mays), 5'ss of exon 3
AGATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCGTCTTGGATTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccatttaagatcaacttcttacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatat-ctttgtag-
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AGAATACAAGGACACAGGAAAACAGTTCAATATACTAGCAGCTGCATGGATACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCAAACAGgt---gcatgcttgatttaattccctaatttgagagccataattttttgaacttaaaaat-agatcttcat--cttccattgagaattttaaatatacattgcagt
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G01480.1 (Glycine max), 5'ss of exon 3
AGATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCGTCTTGGATTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccatttaagatcaacttcttacttgaaatagaatttaatttaatattcaagaatgagattat--aataattatgaatctatggtctgaatatctttgtag-
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GACATACAAGGACACTGGGAAGCAATTCAATGTGATAGCAGCTTCTTGGATTCAGTTTATGATTCATGATTGGATCGATCATCTAGAGGACACCAATCAGgtgcttataattatacttagtatagcgat---aattaaattt--tcaaacatttaaaaaaacacttttcaaaaaattatttaa-taggaagtgagt-tggtcacaat
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 3
AGATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCGTCTTGGATTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccatttaagatcaacttct-tacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatatctttgtag----
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GACATACAAGGACACTGGGAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTAGAAGATACCAATCAGgtccttatatt--atacctacgtatatactt-----atgatctcatata-tatatatatatatatatatatatatcctttttctattatacaaatctcacc-tagtcaa
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 3
AGATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCGTCTTGGATTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccatttaagatcaacttcttacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatatctttgtag
| || || || |||||||| || || |||||||||| ||||||||||| || ||||| ||||||||||| |||||| | ||||| || | |||||| | ||| | || | | || | | || || | |||| | || |||| || ||| || ||| ||| | || | |
GACATACAAGGATACTGGAAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAGgtccttatatt--atattatatatatatatatatatatatatatatatatatatatatatatatatata-tatatatatatatattatctttttctcgtatga-
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G01420.1 (Arabidopsis thaliana), 5'ss of exon 3
AGATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCGTCTTGGATTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccatttaagatcaacttcttacttgaaatagaatttaatttaatattcaagaatgagat-tataataattatgaatctatggtctgaatatctttgtag
| | || | ||||||||||| || ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| | || || || || || || | ||| | | | || | || | | ||||| | || || || | || ||| | | | ||| || | | || ||| |
AAAGTTTATCGACACGGGAAAACAATTCAACATGATTGCAGCTTCTTGGATTCAGTTCATGATCCATGATTGGATTGATCATCTTGAAGACACTCACCAAgttcgtcaattcta--ttatttttctgtttaatccatcatttacgc--acatgcacttatcatatatatgtttttaacgaaaaaattgatttggtaacttag---
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ37878 (Selaginella moellendorffii), 5'ss of exon 3
AGATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCGTCTTGGATTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgcc-----atttaagatcaacttcttacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatatctttgtag
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CGAATTCGCGGACACGGGCAAGCAGTTCAACATGATCGCGGCGTCCTGGATCCAGTTTATGATCCACGACTGGGTCGACCACCAGGAAGACACAAAAGAGgtatgattcgtgtgatcgaagccaaggattcttctcacggatgattttgttttcgatccag------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717077|gb|FC066549.1|FC066549EST: TTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAG ATTGAGCTGACTGCGCCTAGAGAAGTAGCAAGCCAATGCCCCCTCAAATCT
genomic: TTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccat ... atctttgtagATTGAGCTGACTGCGCCTAGAGAAGTAGCAAGCCAATGCCCCCTCAAATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCGTCTTGGATTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccatttaagatcaacttcttacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatatctttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT