Sequence
atgc intronic sequence ATGC exonic sequenceTCCCTTAAACATGAAGATGTAGAGAATATAGGTTATGTCATACCAACGCCAGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcatcagagtgtagtcttgtgcttttcagtttgtgtctgttttaactctcacgagttactctctttatataattatctaaatgtgttcttgttggcta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 5'ss of exon 3
TCCCTTAAACATGAAGATGTAGAGAATATAGGTTATGTCATACCAACGCCAGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcat----cagagtgtagtcttgtgc-ttttcagtttgtgtctgttttaactctcacgagttactctctttatataattatctaaatgtgttcttgttggcta
|| || ||||||||||||| |||||||||||||||||| ||||| || |||||||||||||| ||||| | || ||||| ||| ||| | |||||||||| || | | || | || | | | ||| ||| || || ||| | | ||| || | | | | ||| | | | | ||
TCTCTCAAACATGAAGATGCAGAGAATATAGGTTATGTGATACCCACCCCAGTTATTATGCATTTCATTCAAGACTATGAAAAGTCTGGAGAATATACAGgtaaatgctatacaacttaattgcatgaatatgccatttacttctattgta-tgatcatg-gcccttcttcttttcttttagtataattacctctgtttggg---
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g12780.1 (Oryza sativa), 5'ss of exon 3
TCCCTTAAACATGAAGATGTAGAGAATATAGGTTATGTCATACCAACGCCAGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcatc---agagtgtagtcttgtgcttttcagtttgtgtctgttttaactctcacgagttactctctttatataattatctaaa-tgtgttcttgttggcta
|| |||||||| ||||||||||| || ||||| || |||||||| || ||||| |||| |||||||| | || || || || ||| | || |||||| ||| | | | | | | || || |||| | || |||| | | | | | | | || ||| || | || ||||
TCTCTTAAACACGAAGATGTAGAAAACATAGGCTACGTCATACCCACCCCAGTGATTAATCACTTCATTCAAGACTACGAAAAATCTGGGGAGTACACAGgtaaatctttatattcttagcgtatgaaatttagttctttgggagttaaacttaagggggcacatgtgatggcacatgaatggaaaatggatgctcgttg----
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G165969_T01 (Zea mays), 5'ss of exon 4
TCCCTTAAACATGAAGATGTAGAGAATATAGGTTATGTCATACCAACGCCAGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcatcagagtgtagtcttgtgcttttcagtttgtgtctgttttaactctcacgagttactctctttatataat-tatctaaatgtgttcttgttggcta
|| |||||||||||||||| |||||| ||||| ||||| ||||| || |||||||||| |||||||| ||||| | || ||| | ||| |||||| | | || | || ||| | | || ||||| | || || | | | | | | | ||| | |||
TCTCTTAAACATGAAGATGCAGAGAACATAGGCTATGTTATACCCACCCCAGTTATTAACCACTTCATTGAAGATTACAAAAAATCTGGAGAATACACAGgtaccttcctgttctatttt-tgcatacgatttattgtcttgagcagtgttcttaaggcgcctaggcgagcaagtgcaccagacaaccgccttagcgccta
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G877597_T01 (Zea mays), 5'ss of exon 1
-TCCCTTAAACATGAAGATGTAGAGAATATAGGTTATGTCATACCAACGCCAGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcatcagagtgtagtcttgtgcttttcagtttgtgtctgttttaactctcacgagttactctctttatataattatctaaatgtgttcttg--ttggcta
|| |||||||||||||||| ||||| ||||||||||| ||||| || |||||||||| || ||||| ||| || | || | | | ||| |||||| | | | | | | ||| ||| |||||| | || || | | | || | |||| | |||| |
GTCTCTTAAACATGAAGATGCGGAGAACATAGGTTATGTGATACCGACTCCAGTTATTACACATTTCATTGAGGACTACAAAAATC-TAGAGAATACACAGgtaatatgctcttttctgtaattactgggagtaattgttggtttta-ttagcatga-tcatgcatttgggtccacagtctacaactgttacaaaaataatgg
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AC212112.4_FGT002 (Zea mays), 5'ss of exon 3
TCCCTTAAACATGAAGATGTAGAGAATATAGGTTATGTCATACCAACGCCAGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcatcagagtgtagtcttgtgcttttcagtttgtgtctgttttaactctcacgagttactctctttatataattatctaaatgtgttcttgttggcta---
|| |||||||||||||||| ||||| ||||||||||| ||||| || |||||||||| || ||||| ||| || | || ||| | ||| |||||| | | | | | | ||| ||| |||||| | || || | | | || |||| | |||| | |
TCTCTTAAACATGAAGATGCGGAGAACATAGGTTATGTGATACCGACTCCAGTTATTACACATTTCATTGAGGACTACAAAAAATCTGGAGAATACACAGgtaatatgctcttttctgtaattactgggagtaattgttggtttta-ttagcatga-tcatgcatttgggtccgcagtctacaactgttacaaa-aacaatgg
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G144501_T02 (Zea mays), 5'ss of exon 3
TCCCTTAAACATGAAGATGTAGAGAATATAGGTTATGTCATACCAACGCCAGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcatcagagtgtagtcttgtgcttt-tcagtttgtgtctgttttaactctcacgagttactctctttatataattatctaaatgtgttcttgttggcta----
|| |||||||||||||||| ||||||||||| ||||| ||||| || |||||||||| || |||||| ||| || | || ||| | ||| |||||| || | || | || | ||| | || | || | || |||| | |||| | | || |||| || | ||
TCTCTTAAACATGAAGATGCCGAGAATATAGGCTATGTGATACCGACTCCAGTTATTACACATTTCATCGAGGACTACAAAAATTCTGGAGGATACACAGgt--atta---tgcccttttcagttttattagcataatcatgcatctgggtctacagtctactattgttattagagcaatgaacattgttttttattcttatttt
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G015959_T01 (Zea mays), 5'ss of exon 3
TCCCTTAAACATGAAGATGTAGAGAATATAGGTTATGTCATACCAACGCCAGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcatcagagtgtagtcttgtgcttttcagtttgtgtctgttttaactctcacgagttactctctttatataattatctaaatgtgttcttgttggcta---
|| |||||||||||||||| ||||| ||| ||||||| ||||| || |||||||||| || ||||| ||| || | || ||| | ||| |||||| | | | | | | ||| ||| |||||| | || || | | | || | |||| | |||| | |
TCTCTTAAACATGAAGATGCGGAGAACATATGTTATGTGATACCGACTCCAGTTATTACACATTTCATTGAGGACTACAAAAAATCTGGAGAATACACAGgtaatatgctcttttctgtaattactgggagtaattgttggtttta-ttagcatga-tcatgcatttgggtccacagtctacaactgttacaaa-aacaatgg
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G16820.1 (Glycine max), 5'ss of exon 3
TCCCTTAAACATGAAGATGTAGAGAATATAGGTTATGTCATACCAACGCCAGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcatcagagtgtagtcttgtgcttttcagtttgtgtctgttttaactctcacgagttactctctttatataattatctaaatgtgttcttgttggcta-
|| ||||||||||||||||| ||||||||||| ||||| ||||| || |||||||| | || || ||||| || ||||| |||||||| |||||||||||| | | || | | | | |||| || | || || | || | || || || || ||| | ||| || |
TCTCTTAAACATGAAGATGTGGAGAATATAGGATATGTAATACCCACCCCAGTTATCCTACATTTTATCCGAGACTATGAAAAGAATGGGGCATATACAGgtatctaaaaggatgttttacttctttgtctatttcatacccttctccttcctaaagaagatatcatt-tactcttgctcttgtgtctacttagaggaaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34546836|gb|CF515068.1|CF515068EST: AGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAG GATTCCCAATTCTTGGGGTTGAATGGCAGAAGATGGAAAATCCTGGTCTGC
genomic: AGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcatcaga ... aacatcacagGATTCCCAATTCTTGGGGTTGAATGGCAGAAGATGGAAAATCCTGATCTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCCTTAAACATGAAGATGTAGAGAATATAGGTTATGTCATACCAACGCCAGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcatcagagtgtagtcttgtgcttttcagtttgtgtctgttttaactctcacgagttactctctttatataattatctaaatgtgttcttgttggcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcac