1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTCCTTCACGCCTACCATCATTTCACACTTGTGTTGGTGCTAATGAGGAGAGATTAACTCCAAAATGGTATAAGGAACATGgtaattagtcttcattcgatgcctcgactctagtgctactcttttgtgagaattattttcagaatatgatgtgttttaatgggatatttctttgttgtct...
species | Vitis vinifera |
transcript | Vv14s0066g01100.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTTGGTGCTAATGAGGAGAGATTAACTCCAAAATGGTATAAGGAACATG GAATTGAACTGGTCCTTGGTACTCGAGTCAAATCTGCTGATGTGAGGCGGAEST: gi|110710925|gb|EE087534.1|EE087534
genomic: TGTTGGTGCTAATGAGGAGAGATTAACTCCAAAATGGTATAAGGAACATGgtaattagtc ... ctctgcatagGAATTGAACTGGTCCTTGGTACTCGAGTCAAATCTGCTGATGTGAGGCGGA
EST: TGTTGGTGCTAATGAGGAGAGATTAACTCCAAAATGGTATAAGGAACATG GAATTGAACTGGTCCTTGGTACTCGAGTCAAATCTGCTGATGTGAGGCGGAEST: gi|110686783|gb|EE064815.1|EE064815
genomic: TGTTGGTGCTAATGAGGAGAGATTAACTCCAAAATGGTATAAGGAACATGgtaattagtc ... ctctgcatagGAATTGAACTGGTCCTTGGTACTCGAGTCAAATCTGCTGATGTGAGGCGGA
EST: TGTTGGTGCTAATGAGGAGAGATTAACTCCAAAATGGTATAAGGAACATG GAATTGAACTGGTCCTTGGTACTCGAGTCAAATCTGCTGATGTGAGGCGGA
genomic: TGTTGGTGCTAATGAGGAGAGATTAACTCCAAAATGGTATAAGGAACATGgtaattagtc ... ctctgcatagGAATTGAACTGGTCCTTGGTACTCGAGTCAAATCTGCTGATGTGAGGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTTCACGCCTACCATCATTTCACACTTGTGTTGGTGCTAATGAGGAGAGATTAACTCCAAAATGGTATAAGGAACATGgtaattagtcttcattcgatgcctcgactctagtgctactcttttgtgagaattattttcagaatatgatgtgttttaatgggatatttctttgttgtct
- - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgagaa