Sequence
atgc intronic sequence ATGC exonic sequenceTGCTTGGATACAAAGGTGGCAGTTGGTTTTGCACTGGACATTGCTCGAGCAATGGAATGCTTACATTCTCATGGGATCATACATCGTGACCTGAAACCTGgtatgatttcattatcatttaccttcttgtttggttaattaagcatattgagtttgaattagtggcattttgtgagaatttcctacaaacagttgcatag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g00370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g38080.1 (Oryza sativa), 5'ss of exon 4
TGCTTGGATACAAAGGTGGCAGTTGGTTTTGCACTGGACATTGCTCGAGCAATGGAATGCTTACATTCTCATGGGATCATACATCGTGACCTGAAACCTGgtatgatttcattatcatttaccttcttgtttggttaattaagcatattgagtttgaattagtggcattttg--tgagaatttcctacaaacagttgcatag----
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AGCCTGGAGCCTCGTGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGCGATCATTCATCGTGATCTTAAACCTGgtaagattgc-----tatttggaaacctggttgcttcat-gggcatttacatggtggatttctgcaatccggaataataactattcattagttcatatacaccatg
upper sequence: Vv14s0066g00370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G165231_T01 (Zea mays), 5'ss of exon 3
TGCTTGGATACAAAGGTGGCAGTTGGTTTTGCACTGGACATTGCTCGAGCAATGGAATGCTTACATTCTCATGGGATCATACATCGTGACCTGAAACCTGgtatgatttcattatcatttaccttcttgtttggttaattaagcatattgagtttgaattagtggcattttgtgagaatttcctacaaacagttgcatag---
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AGCCTTGAGCCTCGTGTAGCAGTGGGGTTTGCATTGGACATTGCCCGAGCTATGGAATGCTTACATGCACATGGGATCATTCATCGTGATCTTAAGCCTGgtaagacta-gtcattttgtgatctgatcattgcatg-ctatctatattattcactgcttttctccatgtt-taccatgtgtccgtcgttactttcttcggaa
upper sequence: Vv14s0066g00370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G27560.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCTTGGATACAAAGGTGGCAGTTGGTTTTGCACTGGACATTGCTCGAGCAATGGAATGCTTACATTCTCATGGGATCATACATCGTGACCTGAAACCTGgtatgatttcattatcatttaccttcttgtttggttaattaagcatattgagtt--tgaattagtggcattttgtgagaatttcctacaaacagttgcatag
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CGTTTAGACATTCGTTTGGCTGTTGGTTTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCACGGTATCATTCACCGCGATCTTAAACCAGgta--aatggaaagaaatctaaatccgtgactt-ctaagtatgtatggaaagcttatgatcttattgcatctgcag--------------------------
upper sequence: Vv14s0066g00370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G40540.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCTTGGATACAAAGGTGGCAGTTGGTTTTGCACTGGACATTGCTCGAGCAATGGAATGCTTACATTCTCATGGGATCATACATCGTGACCTGAAACCTGgtatgatttcattatcatttac-cttcttgtt-tggttaattaagcatattgagtttgaat-tagtggcattttgtgagaatttcctacaaacagttgcatag
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AGTTTGGACATACGTGTAGCTGTTGGATATGCCCTTGACATTGCTCGGGCGATGGAATGCTTACACTCTCATGGAGTCATCCATCGCGATCTCAAACCAGgtaattgtttacaataaatcacacttcaagacattatgagttaacaataatgttcttatatcttcttggattgcag---------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110429607|gb|EC996103.1|EC996103EST: AATGGAATGCTTACATTCTCATGGGATCATACATCGTGACCTGAAACCTG AAAACTTGATCCTGACTGCAGATCACAAAACTGTCAAACTTGCGGATTTTG
genomic: AATGGAATGCTTACATTCTCATGGGATCATACATCGTGACCTGAAACCTGgtatgatttc ... cttttcccagAAAACTTGATCCTGACTGCAGATCACAAAACTGTCAAACTTGCGGATTTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTTGGATACAAAGGTGGCAGTTGGTTTTGCACTGGACATTGCTCGAGCAATGGAATGCTTACATTCTCATGGGATCATACATCGTGACCTGAAACCTGgtatgatttcattatcatttaccttcttgtttggttaattaagcatattgagtttgaattagtggcattttgtgagaatttcctacaaacagttgcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaca