1 5' 3' | 2 5' 3' | 3 5' 3' |
AGTCTATGACCGAGACACTCAACGTTCACGTGGATTTGGCTTTGTGACAATGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAGgttatatgcatgcctcctgtttcatatataagttttgaaatttctattttcctctcaaatgaaacccatacttagagagctaggaaccacgcagaggtca...
species | Vitis vinifera |
transcript | Vv14s0066g00140.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAG AGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCEST: gi|110388325|gb|EC953061.1|EC953061
genomic: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAGgttatatgca ... ggtgttgcagAGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGC
EST: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAG AGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGAACGGCCGAGGEST: gi|30252338|gb|CB969889.1|CB969889
genomic: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAGgttatatgca ... ggtgttgcagAGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGAACGGCCGAGG
EST: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAG AGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGAACGGCCGAGGEST: gi|349826258|gb|FQ416063.1|FQ416063
genomic: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAGgttatatgca ... ggtgttgcagAGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGAACGGCCGAGG
EST: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAG AGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGAACGGCCGAGGEST: gi|110405097|gb|EC970630.1|EC970630
genomic: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAGgttatatgca ... ggtgttgcagAGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGAACGGCCGAGG
EST: TGTCCAGTGAGACGGAACTGAATGATGCCATCGCTGCTCTTGATGGACAG AGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGAACGGCCGAGGEST: gi|351042748|gb|FQ431225.1|FQ431225
genomic: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAGgttatatgca ... ggtgttgcagAGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGAACGGCCGAGG
EST: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAG AGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGEST: gi|110705723|gb|EE082897.1|EE082897
genomic: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAGgttatatgca ... ggtgttgcagAGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGG
EST: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAG AGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGAACGGCCGAGGEST: gi|349823323|gb|FQ402522.1|FQ402522
genomic: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAGgttatatgca ... ggtgttgcagAGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGAACGGCCGAGG
EST: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAG AGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGG
genomic: TGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAGgttatatgca ... ggtgttgcagAGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCTATGACCGAGACACTCAACGTTCACGTGGATTTGGCTTTGTGACAATGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAGgttatatgcatgcctcctgtttcatatataagttttgaaatttctattttcctctcaaatgaaacccatacttagagagctaggaaccacgcagaggtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagagag