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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagcattttctcattaacatacatgtacttgtcttttacaaggtagagttaattggagcagtaaatggaattttcgaggacctgcagagcaaaa...

Basic information

species Vitis vinifera
transcript Vv14s0060g02260.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 5'ss of exon 3
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagcattttctcattaacatacatgtacttgtcttttacaaggtagagttaattggagcagtaaatggaattttcgaggacctgcagagcaaaa----
||||||||| |||||||| || ||||| |||||||| ||||||||| | ||||| || ||||| ||||||||||||||| |||| || || ||| | || ||| |  |  |    ||  ||  | ||    |  ||  ||  || |   || | | |  || |      | |    || |  | ||  || | |  |       
AATGAACCCTGAGGATGAAGCTGAGGAGGATGGTGCTAATATTGATTTAGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACTTCCACAAGACAAgta-agaacaaaaacctggtttccctattcct--ttagctcctagattttaca-tcatatgaatggacgacttcctttattcatgaaatggaaaaaattgatta

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 3
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagcattttctcattaacatacatgtacttgtcttttacaaggtagagttaattg--gagcagtaaatgga---attttcgaggacctgcagagcaaaa
||||||||| |||||||| || || || |||||||| || || ||||| || || || ||||| |||||||| ||||||||||| ||||| ||| | || |||   || | ||   | |    |||     ||| | |||  |  |   |  |   |   |   ||   | | | ||   || ||   |   || ||    ||  
AATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATCGATCTGGATTCACAAAGGAAAGGAAAATGCGTTGTTTTGAAGACATCCACAAGACAAgtaagtcaac-ttacttgacggtcatctgc-tacctttctgatgaatcattaaacaagcagtcaagttcttacttgatctatattttggagact-catgataa--

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagcat-tttctcattaacatacatgtacttgtcttttacaaggtagagttaattggagcagtaaatggaattttcgaggacctgcagagcaaaa---
||||||||| |||||||| || || ||||||||||| || || ||||| ||||| || ||||| ||||||||||||||| |||| ||||| ||  | || |||    | | |   |   |||    ||        ||    |||  |  ||   |||| |    |  | |||||     || || || || |     ||    
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaacttgcatgaaatttctgtagccaactatgaaccttatcatata---ttaactttgtccatcaatggt-caatcaagcacttgaactttgaattga

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 3
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc-attttctcattaacata--catgtacttgtcttttacaaggtagagttaattggagcagtaaatggaattttcgaggacctgcagagcaaaa
||||||||| |||||||| || ||||| |||||||| || |||||| | ||||| || ||||| ||||||||||||||| |||| || || ||| | || ||   | | |  || |||  | | ||    |||||  ||  || ||      |   ||   ||     | |  ||| |   ||| |    ||  |   |  | 
AATGAACCCTGAGGATGAAGCTGAGGAGGATGGTGCTAACATTGATTTAGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatctgttctctgctcatcagggtcatgtcttttgctgttctttttttttgtgtgttcatatactgtatgca---ttccactttctaaatctctgac

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 3
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgt-acaccagcattttctcattaacatacatgtacttgtcttttacaaggtagagttaattggagcagtaaatggaattttcgaggacctgcagagcaaaa--------------------
|||||||||||| || || || || ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||  | || || ||||| || ||||| |||    |  |   |   ||  || | | | |||    ||  | ||| | || |  |  |  || ||  |  |  ||||    | ||  ||   ||                      
AATGAACCCAGAAGACGAAGCTGAAGAAGATGGTGCCAATATTGATCTTGACTCACAAAGGAAGGGAAAGTGTGTTGTGCTAAAGACTTCTACTCGACAGgtgacatggacgatgatttcatattat-cttattctt----ttagcgaggaaaagctc-tcagtacaatag-tacatatttctttaatcttgagcttaattatgttttcttttgactgcag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G38030.1 (Glycine max), 5'ss of exon 3
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgt-acaccagc---attttctcattaacatac-atgtacttgtctttta---caaggtagagttaattggagcagtaaatggaattttcgaggacctgcagagcaaaa---------------------------------------------------------
||||||||| || || || || || ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||  | || || ||||| || ||||| |||    |     ||||  |||  |||   |||| | | | |  ||    ||| | |  ||| |||    ||| | ||  || ||   |    |   ||| | ||                                                         
AATGAACCCGGAAGACGAAGCTGAAGAAGATGGTGCCAATATTGATCTTGACTCACAAAGGAAGGGAAAGTGTGTTGTGCTAAAGACTTCTACTCGACAGgtgacatggactaggatttcatattgtcatctgatgttcctatatcatagtttaagattgttttatttgttatagttattgttatctt-atgcttttaacgaggacaagctcttagtacatttttcggtaaccttgagcttaataatgttttcttttgactgcag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 1
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgt-acaccagcattttctcattaacatacatgtacttgtcttttacaaggtagagttaattggagcagta--aatggaattttcgaggacctgcag-agcaaaa
 ||||| ||||| ||||| || || |||||||| || || ||||||||||||||||| ||||| ||||||||||||||  | || ||||| || || ||||| |||    ||| |  |  |  ||| | || | | |||| |    |        |  | ||   | ||   | |   ||| |     | ||  |  ||     
TATGAATCCAGAAGATGAAGCTGAAGAAGATGGGGCCAACATTGATCTTGACTCTCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCCACTCGACAGgtgacaatttcatatcttt-tggacagaaattt-catgtcctccctatttcgatttccagtgttactgtttcattaagattgtttcttatctttaatagtgt--

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 3
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc--attttctcattaacatacatgtacttgtcttttacaaggtagagttaattggagcagtaaatggaatttt-cgaggacctgcagagcaaaa----
||| || ||||| ||||| ||||| ||||||||| | || |||||||||||||| || ||||| ||||||||||||||  | || |||||||| || |||||     |||  ||  | | ||||| ||     |  || |  | | |||  |||  ||  ||| | | | |||  |||| ||   |  ||     ||  |||     
AATAAATCCAGAAGATGAAGCAGAAGAAGATGGTTCCAACATTGATCTTGACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAGgtgacaaagctgataatttaattaagat-----tgtttcttgtcttcaa--tagttttttttgaaactgcaaaatgaatattattaaaacacaaggattaaaccaca

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 3
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgt---acaccagcattttctcatta-acatacatg-tacttgtcttttacaaggtagagttaattggagcagtaaatggaattttcgaggacctgcagagcaaaa
 ||||| ||||| ||||| || |||||||||||||||||||||||||||||||| ||  |||| |||||||||||||| |||||||| |||||||| |||||   ||  |   |     || ||| | ||   |  ||| | |  | | |    |   |||   ||    || ||||    || |    |   ||  ||    | 
GATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttccaaacccattctttagatatgttttctacatcttctcttccgtttcccgtttcatgtctgagcaaatacttttgttttcgttatgtggactgcag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 3
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtaca--ccagcattttctcattaacatacatgtacttgtcttttacaaggtagagttaattggagcagtaaatggaattttcg----aggacctgcagagcaaaa------------
 ||||  ||||||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||| ||| | |||||||| || || |||||  |       | | |   || | | |    |   || ||      |  |  ||   || |    |    | || | | || |    | || ||   | |  ||             
GATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATCGATCTGGACTCTCAGAGGAAGGGAAAGTGTGTCGTTCTAAAAACATCAACTCGTCAGgtgaagttttagactcttatatcaccgttagagagattttcagaactagtggggaacaaactctgactactagtgtagtgtttgtataatgatctcatgggttaattatacttttcag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S218_133V6.1 (Physcomitrella patens), 5'ss of exon 3
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagcattttctcattaacatacatgtacttgtcttttacaaggtagagttaattggagcagtaaatggaattttcgaggacctgcagagcaaaa----------------------------------------------
  | || ||||| ||||| || || || ||||| || ||| ||||  | || |||||||||||||| || |||||||| ||||| ||||| |||||||| || |   |   |   |  |  |||   | |||  ||  ||| | ||   || |  |  ||     | | ||| || ||    |  |     | |  ||||                                              
TGTCAATCCAGAAGATGAAGCCGAAGAGGATGGAGCTAATGTTGACTTGGATTCTCAGAGGAAGGGCAAGTGTGTTGTCTTGAAGACATCCACACGCCAAgtgcgt-actctccacagaacaacgc-cttgtgattagcttctgcagcttataactctttct--taatcaatcgatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactctaacattatttttggtgaacatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864441|gb|DT013496.1|DT013496
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|71860997|gb|DT010052.1|DT010052
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|110724320|gb|EE100046.1|EE100046
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|71859210|gb|DT008265.1|DT008265
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|71858458|gb|DT007513.1|DT007513
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|110711112|gb|EE087285.1|EE087285
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|71857850|gb|DT006905.1|DT006905
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|110685213|gb|EE063376.1|EE063376
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|294964455|gb|GW838258.1|GW838258
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|71859776|gb|DT008831.1|DT008831
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|71863186|gb|DT012241.1|DT012241
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|110724441|gb|EE100272.1|EE100272
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|110722856|gb|EE099502.1|EE099502
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|71861858|gb|DT010913.1|DT010913
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|30252235|gb|CB969786.1|CB969786
EST:     TGTTGTTTTG-GANCATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: TGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|110732813|gb|EE108430.1|EE108430
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|34549827|gb|CF518059.1|CF518059
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|34544589|gb|CF512821.1|CF512821
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|30252226|gb|CB969777.1|CB969777
EST:     TGTTGTTTTG-GANCATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: TGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|37184438|gb|CF603792.1|CF603792
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT
EST: gi|71879123|gb|DT028178.1|DT028178
EST:     ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAG                         ACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAATTAAAGCCT
genomic: ACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagc ... ttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagcattttctcattaacatacatgtacttgtcttttacaaggtagagttaattggagcagtaaatggaattttcgaggacctgcagagcaaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagcaaa