Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGCATCAGTCCAGATTAACATTGGGCATTTAGATGAGAGTGGAACTTACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttctttcttatcttcatttcaagtattattactgatattgttagttatttaaaggtttatggcttgtttttcataagtttagcccttttgtta...

Basic information

species Vitis vinifera
transcript Vv14s0060g02110.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02110.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G27700.1 (Arabidopsis thaliana), 5'ss of exon 3
TCATGCATCAGTCCAGATTAACATTGGGCATTTAGATGAGAGTGGAACTTACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgtt-------atttttc--tttcttatcttcatttcaagtatta------ttactgatattgttag--ttatttaaaggttt--atggcttgtttttcataagtttagcccttttgtta--------------------------------
|||||| || || ||| | |||||||| ||||||||||  | |||    |||||||| || || || ||||||||||| ||||| |||||||| |||||||||       |||| ||  |   || ||   | || |   |  |      | | |  | ||||  |  | ||   |||  ||  |   |      ||   |  | ||    | ||  ||                                
TCATGCCTCTGTTCAGCTCAACATTGGTCATTTAGATGCTAATGGCTTGTACACCGGACAGTTCACAACCTTTGCTCTCTGCGGTTTTGTCCGTGCTCAGgtttgtaacaatttctcaatgctttgtccataattgagtcagaagagagttgatttgttttgtgtgtatcataagaagagttgaacaaccaaccctttgaatttctacttatcttcataggttaattaactattgatgtacacgattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584391|gb|DV221265.1|DV221265
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|34320516|gb|CF373270.1|CF373270
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|77587917|gb|DV223161.1|DV223161
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110372534|gb|EC936710.1|EC936710
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110691741|gb|EE070187.1|EE070187
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110401045|gb|EC967638.1|EC967638
EST:     GGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: GGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110385849|gb|EC950405.1|EC950405
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|71879577|gb|DT028632.1|DT028632
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|34416942|gb|CF415696.1|CF415696
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110696100|gb|EE074877.1|EE074877
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAA                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110396771|gb|EC962470.1|EC962470
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110425492|gb|EC991877.1|EC991877
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110692217|gb|EE071207.1|EE071207
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110693060|gb|EE068961.1|EE068961
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|34416577|gb|CF415331.1|CF415331
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|34415798|gb|CF414552.1|CF414552
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110428421|gb|EC994893.1|EC994893
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110695764|gb|EE074157.1|EE074157
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
EST: gi|110412806|gb|EC978567.1|EC978567
EST:     ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAG                         GGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA
genomic: ACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGgttatttttc ... aactttgcagGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAA