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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGATAAAGATCTAGTATGCTCCTTTGAGATAATGAAACCAGTTGATAATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAGgtatacacaatacaatacaaacttatatcatattgcgtctttaaatatttgactagattagggttcatggcatccaatgttggtgccatgaaagttccttttcttttgttgaccaggtcctcttttcttgtctttgtttttgaacag

Basic information

species Vitis vinifera
transcript Vv14s0060g01750.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27581472|gb|CB004167.1|CB004167
EST:     ATAAAGCATCATCGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAG                         CCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
genomic: ATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAGgtatacacaa ... ttttgaacagCCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
EST: gi|110393373|gb|EC958562.1|EC958562
EST:     ATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAG                         CCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
genomic: ATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAGgtatacacaa ... ttttgaacagCCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
EST: gi|110429218|gb|EC995708.1|EC995708
EST:     ATAAAGCATCATCGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAG                         CCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
genomic: ATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAGgtatacacaa ... ttttgaacagCCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
EST: gi|110372675|gb|EC936860.1|EC936860
EST:     ATAAAGCATCATCGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAG                         CCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
genomic: ATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAGgtatacacaa ... ttttgaacagCCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
EST: gi|45368380|gb|CK906739.1|CK906739
EST:     ATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAG                         CCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
genomic: ATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAGgtatacacaa ... ttttgaacagCCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
EST: gi|30328639|gb|CD011901.1|CD011901
EST:     ATAAAGCATCATCGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAG                         CCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
genomic: ATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAGgtatacacaa ... ttttgaacagCCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
EST: gi|110389271|gb|EC954096.1|EC954096
EST:     ATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAG                         CCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA
genomic: ATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAGgtatacacaa ... ttttgaacagCCCATAAAACCTGGAAAGATCTGATACATGAAAAAGAAGGGTATTTGAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTGATAAAGATCTAGTATGCTCCTTTGAGATAATGAAACCAGTTGATAATAAAGCATCATTGAGCGGTTCTACTGTACCTAAGTTGAATCTTAAGAAGgtatacacaatacaatacaaacttatatcatattgcgtctttaaatatttgactagattagggttcatggcatccaatgttggtgccatgaaagttccttttcttttgttgaccaggtcctcttttcttgtctttgtttttgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG