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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATTCCTCAAGGCATTGGTCGGGAAGGTTGGCTTCAAGCCCTTCCTCGGGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacctatttccctaatttcagcatctctaagccttgttgcatatatttttgtgttcttatctttaatatttgatataaatgacag

Basic information

species Vitis vinifera
transcript Vv14s0060g01580.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g01580.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G09160.2 (Arabidopsis thaliana), 5'ss of exon 3
GCAATTCCTCAAGGCATTGGTCGGGAAGGTTGGCTTCAAGCCCTTCCTCGGGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacctatttccctaatttcagcatctctaagccttgttgcatatatttt---tgtgttcttatctttaatatttgatataaatgacag
|||||||||||||||    |  |||| |  ||||||||||| |||||| ||||| | ||||| || |||||||||||||| || |||||||||||||||||    | | |||     |  ||| |     | |     |   | | | | |||      || ||| | |  ||| || || | |   | ||||
GCAATTCCTCAAGGCGCAAGCAGGGATGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCTGGCTTTGTGAAAACTGACATTGAATTTCAGCAGAAAGgtcttagcttatgcttattttttaaaggctttttgctttctattcttgtttttcaagcatgctctaaccgataagatctgttgtgctt-acag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712240|gb|FC061614.1|FC061614
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|110687767|gb|EE065551.1|EE065551
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCCGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACAG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|71864122|gb|DT013177.1|DT013177
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGATGGGTGGACGG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|110687916|gb|EE065868.1|EE065868
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCCGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACAG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|161713310|gb|FC063693.1|FC063693
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGATGGGTGGACGG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|110730227|gb|EE107063.1|EE107063
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCCGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACAG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|71861089|gb|DT010144.1|DT010144
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGATGGGTGGACGG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|110699523|gb|EE076606.1|EE076606
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCCGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACAG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|71890427|gb|DT039482.1|DT039482
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG