Sequence
atgc intronic sequence ATGC exonic sequenceAGCGTTGTCCCCCAATTGAGGAAGTTATTCAATCTGGCGTTGTTCCTCGCTTTGTTGAGTTTCTTGTGAGGGAGGACTTCCCACAGCTTCAAgtatgttatgataccctccctcatggcttttaaattattcatattgatatgatattttcagacgatttgattatttgaaaaatcctgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G39210.1 (Glycine max), 5'ss of exon 4
AGCGTTGTCCCCCAATTGAGGAAGTTATTCAATCTGGCGTTGTTCCTCGCTTTGTTGAGTTTCTTGTGAGGGAGGACTTCCCACAGCTTCAAgtatgttatgataccctccctcatggcttttaaattattcatattgatatgatattttcagacgatttgattatttgaaaaatcctgtag
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AACGTAGCCCACCAATTGAGGAGGTTATTCAAGCTGGTGTAGTTCCACGCTTTGTTGATTTCTTGATGAGGGAAGATTTTCCACAGCTGCAGgtttgttatc-tgccttgttttactttatgtaatcaatatatttatctttgcttatttatagccttgactttgtttgatttttgttgtag
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 3
AGCGTTGTCCCCCAATTGAGGAAGTTATTCAATCTGGCGTTGTTCCTCGCTTTGTTGAGTTTCTTGTGAGGGAGGACTTCCCACAGCTTCAAgtatgttatgataccctccctcatggcttttaaattattcatattgatatgatattttcagacgatttgattatttgaaaaatcctgtag
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AACGTAGTCCGCCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGCTTTGTTGAGTTTCTCATGAGGGAAGACTTTCCACAGTTGCAGgtttgtacttgt-----ctattttgtttattcaattagtgatttgaatattgcttatggtgatg--ttggtctattgaatgttgcag---
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 3
AGCGTTGTCCCCCAATTGAGGAAGTTATTCAATCTGGCGTTGTTCCTCGCTTTGTTGAGTTTCTTGTGAGGGAGGACTTCCCACAGCTTCAAgtatgttatgataccctccctcatggcttttaaattattcatattgatatgatattttcagacgatttgattatttgaaaaatcctgtag
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AACGTAGCCCACCTATCGAGGAGGTTATTCAAGCTGGTGTAGTTCCACGCTTTGTTGAGTTCTTGATGAGGGAAGATTTTCCACAGCTGCAGgtttgttat--ctgccttgtttactttatttaatcgatatatttatctttgcttatttatttccttgactttgtttaatgtttgttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110359173|gb|EC920237.1|EC920237EST: TTCCTCGCTTTGTTGAGTTTCTTGTGAGGGAGGACTTCCCACAGCTTCAA TTTGAAGCAGCATGGGCTCTCACAAACATTGCTTCTGGGACATCTGACAAC
genomic: TTCCTCGCTTTGTTGAGTTTCTTGTGAGGGAGGACTTCCCACAGCTTCAAgtatgttatg ... aatcctgtagTTTGAAGCAGCATGGGCTCTCACAAACATTGCTTCTGGGACATCTGACAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCGTTGTCCCCCAATTGAGGAAGTTATTCAATCTGGCGTTGTTCCTCGCTTTGTTGAGTTTCTTGTGAGGGAGGACTTCCCACAGCTTCAAgtatgttatgataccctccctcatggcttttaaattattcatattgatatgatattttcagacgatttgattatttgaaaaatcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA