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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTCTGATGACTGCTGGGATTGCTGTAGTCAGCTTCTTTGCCCTACCATCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttcttcttcaccccttcgcctgtcccatattactctttccttccatatttaaatttgttgatttaattttatgcaaccgcag

Basic information

species Vitis vinifera
transcript Vv14s0060g01280.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352765297|gb|FQ465994.1|FQ465994
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|30303742|gb|CB980536.1|CB980536
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|71865313|gb|DT014368.1|DT014368
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|30299286|gb|CB976080.1|CB976080
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|71861591|gb|DT010646.1|DT010646
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|110723031|gb|EE099877.1|EE099877
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|30306301|gb|CB983095.1|CB983095
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTT
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTT
EST: gi|161713995|gb|FC063180.1|FC063180
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATTCTGATGACTGCTGGGATTGCTGTAGTCAGCTTCTTTGCCCTACCATCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttcttcttcaccccttcgcctgtcccatattactctttccttccatatttaaatttgttgatttaattttatgcaaccgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC