1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAGgtactctttttgttttacagtaatccagttaaatagtttttctttttttctcccttgtttaccttaaatattgtacaggtagcatcagcacccaaattctaggatctagtttactgatatgagaaaaaaagccctggtctgatttttattaaaatttcag
species | Vitis vinifera |
transcript | Vv14s0060g00460.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAG GATGTTGGTCTATGAGTATGTCAGCAATGGGAATTTGGAGCAATGGCTTCAEST: gi|110415976|gb|EC981921.1|EC981921
genomic: CACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAGgtactctttt ... aaaatttcagGATGTTGGTCTATGAGTATGTCAGCAATGGGAATTTGGAGCAATGGCTTCA
EST: CACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAG GATGTTGGTCTATGAGTATGTCAGCAATGGGAATTTGGAGCAATGGCTTCAEST: gi|34543460|gb|CF511692.1|CF511692
genomic: CACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAGgtactctttt ... aaaatttcagGATGTTGGTCTATGAGTATGTCAGCAATGGGAATTTGGAGCAATGGCTTCA
EST: CACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAG GATGTTGGTCTATGAGTATGTCAGCAATGGGAATTTGGAGCAATGGCTTCAEST: gi|161719711|gb|FC065745.1|FC065745
genomic: CACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAGgtactctttt ... aaaatttcagGATGTTGGTCTATGAGTATGTCAGCAATGGGAATTTGGAGCAATGGCTTCA
EST: CACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAG GATGTTGGTCTATGAGTATGTCAGCAATGGGAATTTGGAGCAATGGCTTCA
genomic: CACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAGgtactctttt ... aaaatttcagGATGTTGGTCTATGAGTATGTCAGCAATGGGAATTTGGAGCAATGGCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAGgtactctttttgttttacagtaatccagttaaatagtttttctttttttctcccttgtttaccttaaatattgtacaggtagcatcagcacccaaattctaggatctagtttactgatatgagaaaaaaagccctggtctgatttttattaaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG