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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTTTACCGCAAGAAAACTAGGAGAGGATCATCAATATATATGGAAAAGCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctcaaactttatgttgacttgtcaagacaaatcaactgatgatattctccatttttagtttctccagatttttctgtcatgaaaagtttctaattccatgtgcag

Basic information

species Vitis vinifera
transcript Vv14s0060g00230.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32271244|gb|CD720403.1|CD720403
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|161715681|gb|FC068376.1|FC068376
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAA-TCCTG                         ATTTTTTCA-CTGGGATAGA-TAAAGCT-CGTTAT-GTGATG-TGC-TCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|30324545|gb|CD007807.1|CD007807
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|71864790|gb|DT013845.1|DT013845
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|110373337|gb|EC937563.1|EC937563
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|18458238|gb|BM436516.1|BM436516
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|30327012|gb|CD010274.1|CD010274
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|30327090|gb|CD010352.1|CD010352
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|30321442|gb|CD004704.1|CD004704
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|32268077|gb|CD717236.1|CD717236
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|110696063|gb|EE074792.1|EE074792
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|161714504|gb|FC062954.1|FC062954
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
EST: gi|30326319|gb|CD009581.1|CD009581
EST:     GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTG                         ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT
genomic: GCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctc ... ccatgtgcagATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGTTTACCGCAAGAAAACTAGGAGAGGATCATCAATATATATGGAAAAGCAGATCCCATTTACCGGAATTCTGAGCAATAATCCTGAAGAAAATCCTGgtttcttctcaaactttatgttgacttgtcaagacaaatcaactgatgatattctccatttttagtttctccagatttttctgtcatgaaaagtttctaattccatgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA