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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagtttctatttcattcaagttctttaccttttctttattaggaattctattattagatatcatttgcttggtgcatggtgagctttttgcccattct...

Basic information

species Vitis vinifera
transcript Vv14s0036g00630.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os08g45240.4 (Oryza sativa), 5'ss of exon 2
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagtttctatttcattcaagttctttaccttttctttattaggaattctatta--ttagatatcatttgcttggtgcatggtgagct--ttttgcccattct
|||| ||||| ||||||||||| ||||| |||||||| || ||||| || || || |||||||| |||||||| || || |||||||| ||||| |  ||| |      ||||   ||   ||| ||| |   ||  |  |  ||    ||||   ||| |     ||             |||| |    ||  |  |   
ATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACGTCCTCTCAAAAGCTTTTTCACGGTTCCCCTCCTTCAACATGGCAAGGgtatggaaaagtttcga-catactctctacttccactccaagatcaaggacattaagctagctgggggttttgaaaatttacctgaggtagccttaactgt---

upper sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G068255_T01 (Zea mays), 5'ss of exon 2
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaa--gtttctatttcattcaagttctttaccttttctttattagga---attctattattagat-atcatttgcttggtgcatggtgagctttttgcccattct
| || || ||  | || ||||| ||||| ||||| || || |||||||||||||| || |||||||||||||| ||||| |||||||| ||||| |  ||||  |   |  ||| || |||       | ||| | | ||  |  |   |||| |  ||   || ||  |||||  ||| |   |  |  || ||    | |  
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTCTCCAAAGCATTTTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaacggcccatttttatccaaaaa----agcttatttgtagcaaaacttattcaacgatccaattattgtttgccaggttctctg-aaatttgttatgtaata-

upper sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G068255_T02 (Zea mays), 5'ss of exon 1
--ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagt--ttctatttcattcaagttctttaccttttctttattagga---attctattattagat-atcatttgcttggtgcatggtgagctttttgcccattct
  | || || ||  | || ||||| ||||| ||||| || || |||||||||||||| || |||||||||||||| ||||| |||||||| ||||| |  ||||      |  ||| || |||       | ||| | | ||  |  |   |||| |  ||   || ||  |||||  ||| |   |  |  || ||    | |  
AGACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTCTCCAAAGCATTTTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaacggcccatttttatccaaaaa----agcttatttgtagcaaaacttattcaacgatccaattattgtttgccaggttctctg-aaatttgttatgtaata-

upper sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G016106_T02 (Zea mays), 5'ss of exon 1
--ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagt-ttctatttcattcaagttctttacctttt------ctttattaggaattctattattagatatcatttgcttggtgcatggtgagctttttgcccattct
  | || || ||  | || ||||| ||||| ||||| || || |||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| |  |||| | | |  ||| || |||     |||  | |       |||  | |  ||| | |||||| | |||    | | |  ||     |    ||   | |      
AGACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatccctttttatccaaaaggcttatttgtagcaaaacttgttcaacaatccaattatt-gttatgcaatacctattgtcaaattcttttaggggc------

upper sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 2
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagt-ttctatttcattcaagttctttacctttt------ctttattaggaattctattattagatatcatttgcttggtgcatggtgagctttttgcccattct
| || || ||  | || ||||| ||||| ||||| || || |||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| |  |||| | | |  ||| || |||     |||  | |       |||  | |  ||| | |||||| | |||    | | |  ||     |    ||   | |      
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatccctttttatccaaaaggcttatttgtagcaaaacttgttcaacaatccaattatt-gttatgcaatacctattgtcaaattcttttaggggc------

upper sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G30900.2 (Glycine max), 5'ss of exon 3
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagt----ttctatttcattcaagttctttaccttttctttattaggaattctattattagatatcatttgcttggtgcatggtgagctttttgcccattct
||||||||||  | || ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||   |||||||    |   || | | || | |||| ||  | ||   |  |     |  |  || |    | |||||  ||  | | || | || ||||||        
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggttctcatctaactcgaattctctatatgtttagttatgattgtcgtgctagtgtg-agcattt-tttatttcctgttcagatttttgtttgaa--

upper sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G01300.1 (Glycine max), 5'ss of exon 3
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagtttctatttcattcaagttctttaccttttc--tttattaggaattctattatta--gatatcatttgcttggtgcatggtgagctttttgcccattct----------------------------------------------------------------------------
||||||||||  | ||||| || |||||||| ||||| ||||||||||||||||||||||||| |||||||||||| |||||||| ||  ||||    ||||||   |   ||||  |  |    |   ||||   ||||  |   ||| |  |  |   |  | |||||   |  | | |  | || ||||||                                                                                    
ATGATTATCGGCTCTTTTGCGGCGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGTATTTTCACGATTCCCTTCCTTTAACTTGGCACGGgtaagtggattactcatctagctcaaatgatttttatgtttaggaatgattgtggtgcttctgtgagcatttttctatttcctcttcagatttttgtttgaagggacagagttgttaatatttgtgtatcttaacgtaggtcttgcttaatgacctgaagttatgtttgatcttgtctag

upper sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 3
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagtttctatttcattcaagttc--tttaccttttctttattaggaattctattattag-atatcatttgcttggtgcatggtgagctttttgcccattct
||||||||||  | || ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||  ||||   |||||||   |   ||||  || |    ||  | || | |||| |    ||| |  |  |||  |     ||  ||  | | || | || ||||||        
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggattcctcatctaactcgagttctctttatgtttagttatgattgttgtgctagtgtgagcattttttatttcctgttcagatttttgtttga---

upper sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G04500.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagtttctatttcattcaagttctttaccttttct--ttattaggaattctattattagatatcatttgcttggtgcatggtgagctttttgcccattct-
|||| |||||| | || |||||||||||||| || || |||||||||||||||||||| ||||||||| |  |||| ||  ||||||||||||| || |||| | | ||| ||  ||    | ||   ||||  |  |||||   |  |   ||  ||   | ||| |  |||    |   | ||   | ||    |  | 
ATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATGTTCTTTCCAAAGCATTTGCTAGATTCCCCACCTTCAATATGGCCAAGgtaactgtgtatatctctcctccttttcggctttagtgattattcatatctggtttcctatgaa-catatatttgag--aacattagtcatgtgattgtagtc