Sequence
atgc intronic sequence ATGC exonic sequenceGCGCACCTGCTGTGAAGCTAGCTTGAAGTGTCTTGATGTTGAATATATTGACTTGTATTATCAGCATTGTGTGGATACATCAGTACCTATAGAGGACACTgtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaaaattttaaattttatttgaacttatatttcttctaaatgagagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G40860.1 (Glycine max), 5'ss of exon 3
GCGCACCTGCTGTGAAGCTAGCTTGAAGTGTCTTGATGTTGAATATATTGACTTGTATTATCAGCATTGTGTGGATACATCAGTACCTATAGAGGACACTgtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaaaattttaaattttatttgaact-tatatttcttctaaatgagagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatag
||| | ||||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||| | ||||| ||||| |||||||||||||| || || | |||| ||||||| |||||| | |||| ||| ||| ||| || | | ||||||| | | || | | | | | | ||| | | | ||| || || | | | | | | | ||
GCGATCATGCTGTGAAGCTAGCTTGAAGCGTCTTGATGTTGAATACATTGATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt-tcttcctc------------tcaatgat--------tttgatcatagtagactttatatatatacctgtgaaaatttagtaatataatgatattatctggcttatctcactagatattagatatgttattaacgtttgttataatattatag---------------
upper sequence: Vv14s0030g01960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G40870.1 (Glycine max), 5'ss of exon 3
GCGCACCTGCTGTGAAGCTAGCTTGAAGTGTCTTGATGTTGAATATATTGACTTGTATTATCAGCATTGTGTGGATACATCAGTACCTATAGAGGACACTgtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaaaattttaaattttatt--tgaacttatatttcttctaaatgagagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatag
|||| | ||||| ||| |||||||||| |||||||||||||||| ||||| | |||||||||||| | ||||| ||||| |||||||||||||| || || | |||| ||||||| |||||| | ||||| | |||||| | | |||| ||| | | | | || ||| | | || | | | || || | ||
GCGCTCATGCTGCGAAACTAGCTTGAAACGTCTTGATGTTGAATACATTGATCTCTATTATCAGCATAGGGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt-tcttcctc------------tcaatgattttgatcatagtatgatgctattatctgg-cttatctcactagatactagatatattactaataaaaaagttaatttgttatataatag---------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30253253|gb|CB970804.1|CB970804EST: ACTTGTATTATCAGCATCGTGTGGATACATCAGTACCTATAGAGGACACT GTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGA
genomic: ACTTGTATTATCAGCATTGTGTGGATACATCAGTACCTATAGAGGACACTgtaagtgatt ... tgtaatatagGTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGCACCTGCTGTGAAGCTAGCTTGAAGTGTCTTGATGTTGAATATATTGACTTGTATTATCAGCATTGTGTGGATACATCAGTACCTATAGAGGACACTgtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaaaattttaaattttatttgaacttatatttcttctaaatgagagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA