Sequence
atgc intronic sequence ATGC exonic sequenceACATGTCTTGTTTTCAAGGGCTCTTCTTTTGCCCAGATGCAGCTTCTTTGCTGCTTCATAACTTCTGCATTTACCACATTGATGCTCCTGGACATGAGgtcagtactgctattgcatttttctttatgctctggaatctggattgttgtttatttgtatattcattgctcattggtgtttctttggcgattctaatggattctgtctccctttgtttaagagttcttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G467159_T01 (Zea mays), 5'ss of exon 4
ACATGTCTTGTTTTCAAGGGCTCTTCTTTTGCCCAGATGCAGCTTCTTTGCTGCTTCATAACTTCTGCATTTACCACATTGATGCTCCTGGACATGAGgtcagta----ctgctattgcatttttctttatgctctggaatctggattgttgtttatttgtatattcattgctcattggtgtttctttggcgattctaatggattctgtctccctttgtttaagagttcttgtag
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ATATGTCTTGCTTCCAAGGGCTACTCTTCTGTCCTGAAGCAGCTTCATTGCTGCTTCATAATTTTTGCATTTACCATATCAGCCCCCCAGGACATGAGgtcagtggagtttgctgttacagtgaagtttattattt----ctgtggttatcttaacatgatgcatttagtgattctcaaccaacattt--ccatgctggtacggtttactgatcttcg---gaaaaaccatgcag
upper sequence: Vv14s0030g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G36650.1 (Glycine max), 5'ss of exon 3
ACATGTCTTGTTTTCAAGGGCTCTTCTTTTGCCCAGATGCAGCTTCTTTGCTGCTTCATAACTTCTGCATTTACCACATTGATGCTCCTGGACATGAGgtcagtactgctattgcatttttctttatgctctggaatctggattgttgtttatttgtatattcattgctcattggtgtttctttggcgattctaatggattctgtctccctttgtttaagagttcttgtag
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ATGTCTCTTGTTTCCAGGGTCTGTTGTTCTGCCCAGAGGCAGCTTCTTTGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGACATGAGgtcggtattgtta--gcattcttccccttccttccaactc-atatagccaac-ataggcttttccatttcattttgaagtcttcaacatgatt-----gaatgctgaag------------------------
upper sequence: Vv14s0030g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G30270.2 (Glycine max), 5'ss of exon 3
ACATGTCTTGTTTTCAAGGGCTCTTCTTTTGCCCAGATGCAGCTTCTTTGCTGCTTCATAACTTCTGCATTTACCACATTGATGCTCCTGGACATGAGgtcagtactgctattgcatttttctttatgctctggaatctggattgttgtttatttgtatattcattgctcattggtgtttctttggcgattctaatggattctgtctccctttgtttaagagttcttgtag
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ATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAGgtcggtatta-----gcattcttcgccttccttcccaactcatataaa-gctcatctaggcttttctatgtaactg-tatcccttt--tcattttgaaatcttcaacat------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33404447|gb|CF210074.1|CF210074EST: TGCTGCTTCATAACTTCTGCATTTACCACATTGATGCTCCTGGACATGAG TTGGGAGCTGACGTGATTTCCTCAGATGTACCCTTGCTCAGTGTTGATGAC
genomic: TGCTGCTTCATAACTTCTGCATTTACCACATTGATGCTCCTGGACATGAGgtcagtactg ... gttcttgtagTTGGGAGCTGACGTGATTTCCTCAGATGTACCCTTGCTCAGTGTTGATGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACATGTCTTGTTTTCAAGGGCTCTTCTTTTGCCCAGATGCAGCTTCTTTGCTGCTTCATAACTTCTGCATTTACCACATTGATGCTCCTGGACATGAGgtcagtactgctattgcatttttctttatgctctggaatctggattgttgtttatttgtatattcattgctcattggtgtttctttggcgattctaatggattctgtctccctttgtttaagagttcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - GCTGCT