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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattatataaatctctttttctcatttgatttcatcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt...

Basic information

species Vitis vinifera
transcript Vv14s0030g01620.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g13530.1 (Oryza sativa), 5'ss of exon 2
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattatataaatctctttttctcatttgatttcatcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagatgatctt-tattt-------
||| || ||||| ||||| || ||||| || ||||| ||  | || || ||     | ||    || |||||||||||||| |||||||||||||||||||||            |||| ||      ||||| ||  |  ||         ||  || ||   | | ||    |  |   || |  |  ||||  || |        
CCGCACCCACTTCGGAGGAGGCAAGTCCACCGGATTCGGACTCATCTACGACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgc-------gcctctcttgtctcgttgatctcgccctgctcttgatagtttagtttaatcgtgatgc-tatgctgaaatctgaacaatctagtactactagagt

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g36160.1 (Oryza sativa), 5'ss of exon 2
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaa------attatataaatctctttttc-tca-tttgatttc---atcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt
||| || ||||| ||||| || ||||| || ||||| ||  | || || ||     | ||    || |||||||||||||| |||||||||||||||||||||       ||     | | || | |  | ||| | ||  |||   ||   | ||  |||||        |||  |||||| ||  |  ||  |  | ||          
CCGCACCCACTTCGGAGGCGGCAAGTCCACCGGATTCGGCCTCATCTACGACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcacgcatcgctcagaactttgtgccatcactctgcattctgaatttgggattgagctagcgga---atggtggttgttcgcctcagtgctcggttgtg--------

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g52490.1 (Oryza sativa), 5'ss of exon 3
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaa--attatataaatctctttttctcatttgatttcatcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt
||| || ||||| || || || ||||| || ||||| ||  | || || |||    | ||    ||||||||||||||||| |||||| | ||||||||||||   || ||   |  |  |  |   |||||   | | |    ||     || |    | | |    |||||       | | |    | |  |  || | 
CCGCACCCACTTCGGTGGAGGCAAGTCCACCGGATTCGGCCTCATCTACGATAACCTCGACGCCGCGAAGAAGTACGAGCCCAAGTACCGCCTCATCAGGgtatgtatcattctagcccttgctcgccatttccctgctttgc-cagtgccctgtgtaatttgtagtagttgtcaaaccatttctagcaacgcacgctaat-

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattatataaatctctttttctcatttgatttcatcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt--------
 || ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | |||| ||||||| | | | ||| ||    | ||        ||  | | |  | | | |   |      ||||| || ||||| |  || | | |        
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttctgtgtcaattatgattat--------aatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 3
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattatataaatctctttttctcatttgatttcatcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt-------
||| ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| | ||   ||||||| | | | ||| |||   | || |    |   ||| |  |     |||  | | |   ||||| |||| ||||| ||| | | |       
CCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcattaaatctttctgtgtcaattgtcattataatttttttggctttgtt-----tgaatgcttttt-tttttatatt-agatggtctgtttataaattta

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 3
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattatataaatctctttttctc-atttgatttcatcaagcatc--aagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt
||| || || ||||||||||| || || |||||||||||||||||||||||| |||| |||||||| |||||||| ||||| || |||||||| |||||||| | | | | || |  |     |||   ||| |||  |  |  |||  ||   |   |   | |  ||  | |   |||||  | |       || ||    
CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtca-acaattaacacaacctctgcttgtttttttttacaatctgaaatcacatttgttttatggtatttagatttttacagtcctgcactccttgc--

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G40530.1 (Glycine max), 5'ss of exon 3
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaa-------attatataaatctctttttctcatttgatttcatcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt
||| || || ||||||||||| || || |||||||||||||||||||||||  || | || ||||| || ||||| ||||| || |||||||| |||||||| |       |||||   || ||||  || | | ||  | |    || |   || |  |||||| |    |   | ||  |||||  | |       ||       
CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGACACAATGGAAAATGCTAAAAAGTATGAGCCCAAATACAGGCTTATCAGGgtgagtcaacaattattacaacctctgcttttaaatttttgtttataatctgaaatcacttctgttttatggtactttg-atttttacagtgctgcattcc------

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G28060.1 (Arabidopsis thaliana), 5'ss of exon 3
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattatataaatctctttttctcatttgatttcatcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt-----------------------------------------------------------
| | ||||||||||||||||| || ||| |||||| ||||||||| |||||| | || ||||| || |||||||  |||||||||||||| || |||||||||| || |      || |  || |    |  ||   | || | |   | | |  | | ||     | | | | | || ||  || |||  ||  |  ||                                                           
CAGAACTCACTTTGGAGGTGGTAAATCTTCTGGATATGGTTTGATCTATGATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttct------ctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagct-tac-tcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacag

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S37_112V6.1 (Physcomitrella patens), 5'ss of exon 3
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattatataa-atctctttttctcatttgatttcatcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagat---gatctttattt---------------------------------------------
| |||| || ||||||||||| ||||| ||||| || ||| | || || || || |||||   ||| ||||| |||||||| |||||||||||||| ||||||  || | |     | |    | |||   ||||||  | ||    || ||||    |||   |   || |   |||   | |    ||    | | | |||                                              
CAGGACCCAATTTGGAGGTGGCAAGTCCACTGGGTTCGGTCTTATCTACGACTCTGTTGACTCTGCTAAGAAATACGAGCCCAAGTACAGGCTCATTAGGgtatgttctgtctcggcgcagggtgtcacgggatttctgcgagtgataatctatagcttatgctacctttctcaatttcattctggcaatcgaaaacctaattctgcatccactgtaattttaataactttcaaattgggaacatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34550927|gb|CF519135.1|CF519135
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|110362912|gb|EC926471.1|EC926471
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|30321070|gb|CD004332.1|CD004332
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|71866240|gb|DT015295.1|DT015295
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|33406884|gb|CF212511.1|CF212511
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|71872113|gb|DT021168.1|DT021168
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|18458660|gb|BM436938.1|BM436938
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTTTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|30135948|gb|CB921286.1|CB921286
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|37184145|gb|CF603499.1|CF603499
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|351029237|gb|FQ435437.1|FQ435437
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|71874519|gb|DT023574.1|DT023574
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|110714825|gb|EE092178.1|EE092178
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|110701352|gb|EE078828.1|EE078828
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|110407407|gb|EC973007.1|EC973007
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|37187949|gb|CF607300.1|CF607300
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|33406976|gb|CF212603.1|CF212603
EST:     GCGAAGAAGTACGAGCCTAAGTACAGGCTCATC-CG                         ATCNTGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGA
genomic: GCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagA--ATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGA
EST: gi|352785814|gb|FQ475817.1|FQ475817
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|46919451|gb|CN548780.1|CN548780
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|110694122|gb|EE070954.1|EE070954
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|32458654|gb|CD799828.1|CD799828
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTTTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|71886870|gb|DT035925.1|DT035925
EST:     CGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: CGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|351053839|gb|FQ441605.1|FQ441605
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|32268605|gb|CD717764.1|CD717764
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|110402749|gb|EC963356.1|EC963356
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|87585712|gb|DY474319.1|DY474319
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|32269613|gb|CD718772.1|CD718772
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|110400221|gb|EC966773.1|EC966773
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|110707923|gb|EE084876.1|EE084876
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|34319409|gb|CF372163.1|CF372163
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|351049488|gb|FQ429110.1|FQ429110
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCACG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|110391519|gb|EC956500.1|EC956500
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|34416045|gb|CF414799.1|CF414799
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|77578503|gb|DV218045.1|DV218045
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|22007443|gb|BQ792477.1|BQ792477
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|110701262|gb|EE078640.1|EE078640
EST:     ATTCAGTTGAGAATGCGAAG---TACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|161718020|gb|FC068553.1|FC068553
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAAG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|30253086|gb|CB970637.1|CB970637
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|30296070|gb|CB972864.1|CB972864
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|110396446|gb|EC962132.1|EC962132
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|30253161|gb|CB970712.1|CB970712
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|87585035|gb|DY473961.1|DY473961
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|349813139|gb|FQ411379.1|FQ411379
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|71889488|gb|DT038543.1|DT038543
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
EST: gi|351026260|gb|FQ428272.1|FQ428272
EST:     ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGG                         AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG
genomic: ATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattata ... ttggtggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattatataaatctctttttctcatttgatttcatcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT