Sequence
atgc intronic sequence ATGC exonic sequenceTAGCTGACAATGTTGGTGTACCATGTCGACTGGTAAAAGGTAGTCATTACACTGGCGTAGAGGATGATGCTGTCAACATAATAAAATTGGATAATGAAAGgttacaacttctgcttgttttagaatcttttattatgtttacctttatggctgctgctaaggactgttatttgaatactgcacgtagtattctttttaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 4
TAGCTGACAATGTTGGTGTACCATGTCGACTGGTAAAAGGTAGTCATTACACTGGCGTAGAGGATGATGCTGTCAACATAATAAAATTGGATAATGAAAGgttacaacttctgcttgttttagaatcttttattatgtttacctttatggctgctgctaaggactgttatttgaatactgcacgtagtattctttttaat--------------------------------------------------------------------------
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TAGCTGACAACATTAATATGCCTTGTAGACTGGTAAAAGGTAGTCATTACACTGGTGTCGAGGATGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGgttaaggcttttacatctttgtatttttcttgtatttgttaatttactaatttatg-taatcattgg-atacaaat-ttatatgcatggaaatgattgatgcgatcattggatatctctaagtttacccggaaagtttatgttgtggtactgacatctcctactctgctttcag
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G37330.1 (Glycine max), 5'ss of exon 3
TAGCTGACAATGTTGGTGTACCATGTCGACTGGTAAAAGGTAGTCATTACACTGGCGTAGAGGATGATGCTGTCAACATAATAAAATTGGATAATGAAAGgttacaacttctgcttgttttagaatcttttattatgtttacctttatggctgctgctaaggactgttatttgaatac-tgcacgtagtattctttttaat-----------------------------------------------------------------------------------
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TAGCTGACAACATTAATATGCCTTGTAGACTGTTAAAAGGTAGTCATTACACTGGTGTGGAGGATGATGCTGTCAACATTATAAAGTTGGAGGGTGAAAGgttaaggcttttacatctttgtatttttcttgtatttgttaatttactaatttatgtatgcatgtgtatatcatgtgcatgcctat-gtactcttgtaaatggttgaggcaatcattggatgtctctataagttcacccagaaagtttatgttgtggtactgacgtctcctactctgctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254916843|gb|GR905669.1|GR905669EST: ACTGGCATAGAGGATGATGCTGTCAACATAATAAAATTGGATAATGAAGG GGAGTTTTTGGTTGATCTCATGGGAGCCCCTGGGACACTTATTCCAGCTGA
genomic: ACTGGCGTAGAGGATGATGCTGTCAACATAATAAAATTGGATAATGAAAGgttacaactt ... ctgttttcagGGAGTTTTTGGTTGATCTCATGGGAGCCCCTGGGACACTTATTCCAGCTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGCTGACAATGTTGGTGTACCATGTCGACTGGTAAAAGGTAGTCATTACACTGGCGTAGAGGATGATGCTGTCAACATAATAAAATTGGATAATGAAAGgttacaacttctgcttgttttagaatcttttattatgtttacctttatggctgctgctaaggactgttatttgaatactgcacgtagtattctttttaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG