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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCGTTGTTCACACTTGGACAACAAGGACTTGTTCTCTAAAAGTgtatgtacttagaaccctgacttagagcattttgttacttgtgtattgatttgtgtttgggtcttaaatttttcacatctttttttttctttattag

Basic information

species Vitis vinifera
transcript Vv14s0030g00550.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 6
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCGTTGTTCACACTTGGACAACAAGGACTTGTTCTCTAAAAGTgtatgtacttagaaccctgacttagagcattttgttacttgtgtattgatt-tgtgtttgggtctt---aaatttttcacatctttttttttctttattag
| | ||||| ||||| || || || ||||||||||||| |||  ||||| |  | || |||||| | |||||||| ||||||||||| ||||||||||||||||| | |     |||  |  | |   ||||   | | ||| | ||  || | || ||||   ||   |||  | || ||| ||  ||||||||    ||
AATTACTGTTCATGCTGAAGAGACCGTTGCTTCAAGGAGTGCAGTTGAGATGGTCTTACGTTGTACTCACTTGGATAACAAGGACTTTTTCTCTAAAAGTgtatgcattctattcccacatgttgcctatttaagtgcatgtttgttttttatttgattggccttttggaaaaatctctcatattcgtttttcttg--cag

upper sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCGTTGTTCACACTTGGACAACAAGGACTTGTTCTCTAAAAGTgtatgtacttagaaccctgacttagagcattttgttacttgtgtattgatttgtgtttgggtcttaaatttttcacatctttttttttctttattag
|||| || |||| || || |||||||||||||| |  | ||    |||| |||  || || |||    | ||||| |||||||||||||||||||| |||||| ||||  |           | |  | | | | ||    | |  |||||| |    |   ||| || || | |  |  |||| | | | ||    
ACTCTCTATCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATTAATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTgtacgtacaaacttatgcattcttgtccttctaggtaacaatattatgatttcttgcagaagctttaacttgttatcttattttctctttctag---