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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGATGGGAAGGATgtatgcttctcacaaatgcaagttctttcatagtagcttgttaatggaacagtattttttttgggacaatttcacttggcatgttaattagggaacttaatgtgtcag

Basic information

species Vitis vinifera
transcript Vv14s0006g02480.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g04660.2 (Oryza sativa), 5'ss of exon 5
CTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGATGGGAAGGATgtatgcttctcacaaatgcaagttctttcatag-tagcttgttaatggaacagtattttttttgggacaatttc--acttggcatg---ttaattagggaacttaatgtgtcag
||| || ||| |||| |  ||| | |||  ||   |||| |||||||| ||  ||||| | ||||||||||||||||| |||||||||||||| ||| | |||   || ||   ||   | |||  | || |  ||| |     ||   |   |  || || |  | ||||||   |  || || |    |  |  || || ||  | | ||||
CTCGGTGCTGATAACTGCAGTTGTAACTACTGTGGTAAAGAATGCAGTAGGAAGACCTAGGCCAGACTTCTTTTGGCGGTGTTTTCCTGATGGAAAGCAGgtagagttttcctcaa---atgtttatgcacaaatagttctaccattttatgttgcttgttatttgtcaattttgaaactgacaaggcactgttctggtaattt--tatctcag

upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G53100.1 (Glycine max), 5'ss of exon 4
CTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGATGGGAAGGATgtatgcttctcacaaatgcaagttctttcatagtagcttgttaatggaacagtattttttttgggacaatttcacttggcatgttaattagggaacttaatgtgtcag
||| ||| |  ||||||  ||  ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||  |   |||   || | ||  ||      || | |||      |  | ||  | | |   ||   | ||    | ||| |  ||   |||  |       
CTCCGTTTTAATAACAGCAGTATTTACTGAGGCAATAAAAAATGCAGTAGGTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGATGGAAAGGATgtatgttttcctttaattttaggttttcaattcatatttatcaattatgttggttcttaatagtgggcat---aattaat-tattagt--ggcttcttgttag-----

upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G09820.1 (Glycine max), 5'ss of exon 4
CTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGATGGGAAGGATgtatgcttctcacaaatgcaagttctttcatagtagct-tgttaatgg--aacagtattttttttgggacaatttcacttggcatgttaattagggaacttaatgtgtcag
|||  || |  ||||    ||  ||||||| || |||||||||||||| ||||||||||| || |||||||| ||||| |||||||| ||||| |||||||||||  | | |    | ||| ||| |   ||  |  | |||| ||     |||||     |  |     |||      |||| ||||  ||||                 
CTCCATTTTAATAACCTCAGTATTTACTGAAGCCATAAAAAATGCAGTAGGTCGACCTCGTCCGGACTTCTTCTGGCGATGTTTTCCAGATGGAAAGGATgtatgtattttaggtgttcaa-ttcatatttatcaattatgttgattcttgacagtgggcatact----taatgattaatggcttgttg-ttag-----------------

upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G02600.5 (Arabidopsis thaliana), 5'ss of exon 4
CTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGATGGGAAGGATgtatgcttctcacaaatgcaagttctttcatagtagcttgttaatggaacagtattttttttgggacaatttcacttggcatgttaattagggaacttaatgtgtcag
|||||||||||| ||||  ||  |||| ||||||||||| ||||||||||||||||| || || |||||||| |||||||||||||| ||||| || | ||||    | |||        |||| || | ||     || | |||       |   | ||      | ||||  |||  ||                           
CTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGATGGCAAAGCTgtacatgtttca-----atgagtttttacttatctcgttttaaatcttgttctgcctcttgaatctcgattttgcttatcag--------------------------