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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattcttattttcaaatttctgatggtgtgatcactggatgttgaaagaaatgctggtttctactattttccaattaaagctttattattaatgtcag

Basic information

species Vitis vinifera
transcript Vv14s0006g02010.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110391364|gb|EC956333.1|EC956333
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|34416304|gb|CF415058.1|CF415058
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110374310|gb|EC939449.1|EC939449
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110419753|gb|EC986002.1|EC986002
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110727608|gb|EE104559.1|EE104559
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|34415263|gb|CF414017.1|CF414017
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110730829|gb|EE108353.1|EE108353
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110382977|gb|EC947311.1|EC947311
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110716041|gb|EE090674.1|EE090674
EST:     GAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: GAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110377450|gb|EC942515.1|EC942515
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110420660|gb|EC986936.1|EC986936
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110691516|gb|EE069706.1|EE069706
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110687340|gb|EE064675.1|EE064675
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110687110|gb|EE064235.1|EE064235
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110379202|gb|EC944382.1|EC944382
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110426370|gb|EC992776.1|EC992776
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
EST: gi|110378112|gb|EC943228.1|EC943228
EST:     AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAG                         GACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG
genomic: AGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattctta ... ttaatgtcagGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCACTGGGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCACTTATTTCCAAGgtaattcttattttcaaatttctgatggtgtgatcactggatgttgaaagaaatgctggtttctactattttccaattaaagctttattattaatgtcag

- - - - - - -  AAGAGG
- - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - -  AAGAAA