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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATCTGGACATAATGAAAATTTTGAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaatctttgccagtggccttctgtaaacatcattggtcgatgctattttttgaatgaagttatgatgttttgtatgaacccttggttttcatgcag

Basic information

species Vitis vinifera
transcript Vv14s0006g01790.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g49610.1 (Oryza sativa), 5'ss of exon 3
GAAGATCTGGACATAATGAAAATTTTGAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaatctttgccagtggccttctgtaaacatcattggtcgatgcta-ttttttgaatgaagttatgatgttttgtatgaacccttggttttcatgcag
|||||| | ||  |  ||||||   ||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||  || ||   | ||         ||||   | | |||       | ||  ||   || |||| | |    |    || ||| |   | | | || |     
GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCAATCTCGTGGTCAAGGATTTTCCCTGgtaaataaaaatatggc---------tctggctatagcatctacttgtactggttagctggatgaggatgaattccactg-atgcattttggttatttag----

upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g49600.3 (Oryza sativa), 5'ss of exon 3
GAAGATCTGGACATAATGAAAATTTTGAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaatctttgccag-tggccttctgtaaacatcattggtcgatgctattttttgaatgaagttatgatgtttt---gtatgaacccttggttttcatgcag
|||||| |  |  | ||||||| ||||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||  |  | |||    ||| | |     |||   | | ||     |   |  |||||| |||||   | || |  |      ||||  || ||||| | | |    
GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgagtctgactcagattgtagcatgttgccctgataccctgcatcattttttttaatgacaatttgttactgccaaatatgcgcctttggtgtacctag--

upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g49600.2 (Oryza sativa), 5'ss of exon 3
GAAGATCTGGACATAATGAAAATTTTGAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaatctttgccag-tggccttctgtaaacatcattggtcgatgctattttttgaatgaagttatgatgtttt---gtatgaacccttggttttcatgcag
    || |  |  | ||||||| ||||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||  |  | |||    ||| | |     |||   | | ||     |   |  |||||| |||||   | || |  |      ||||  || ||||| | | |    
----ATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgagtctgactcagattgtagcatgttgccctgataccctgcatcattttttttaatgacaatttgttactgccaaatatgcgcctttggtgtacctag--

upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AC217401.3_FGT001 (Zea mays), 5'ss of exon 3
GAAGATCTGGACATAATGAAAATTTTGAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaatctttgcca-gtggccttctgtaaacatcattg--gtcgatgc-------tattttttgaatgaagttatgatgttttg---tatgaacccttggttttcatgcag
|||||| | ||| | ||||||| ||||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||  || || ||  |  | || |    |  ||   | ||| |  ||| | |        |  |||| |  | ||||     ||   ||    ||| | | |||||||   |    
GAAGATGTCGACCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacata-aacctgagttaagttgtacacaatacttaacatggcagtctaggagcacaagttcttttaggtttaagtaccagtgcggtgacacatgcaactttggtttctgtag--

upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AC217401.3_FGT002 (Zea mays), 5'ss of exon 3
GAAGATCTGGACATAATGAAAATTTTGAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaatctt-tgccagtggccttctgtaaac--atcattggtcgatgctattttttgaatgaagttatgatgttttgtatgaacccttggttttcatgcag
|||||| | ||  | |||||||   | ||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||   || |||||    | | |  |    | || ||  |   |||     |   | |       ||    |  |||   | |  ||   | | |  | ||  |   
GAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCAATCTCCTGGTCCAGGATCTTCCCAGgtgcataaaatctgactctactaacaccatatatactaactgttgagttgtatgagtcaccagttgcttattggatccatcgattgtgtcttggtctatctag---

upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G148176_T01 (Zea mays), 5'ss of exon 3
GAAGATCTGGACATAATGAAAATTTTGAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaatctttgccagtggccttctgtaaacatcattggtcgatgctattttttgaatgaagttatgatgttttgtatga-acccttggttttcatgcag
|||||| || |||||||||| |   ||   |||||||| ||||||||||| ||||| ||||| ||||||||||| |||| ||    ||  | |    |   ||         || | |||| | |   ||| |    |  |||| ||    | | ||| | |  |   |           
GAAGATGTGAACATAATGAAGAACATGGGCTTTGATGCGTACCGATTTTCGATCTCTTGGTCGAGGATTTTCCCAGgtaggtgtgctccattctgtagaattt---------tcttgggtccaaggagtttctgaggtagagttctgtgtgtatatataatatacgcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351041108|gb|FQ444085.1|FQ444085
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352781654|gb|FQ468952.1|FQ468952
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352778017|gb|FQ467070.1|FQ467070
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|71870097|gb|DT019152.1|DT019152
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|349826342|gb|FQ417839.1|FQ417839
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|349826549|gb|FQ418640.1|FQ418640
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351055499|gb|FQ442295.1|FQ442295
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352777870|gb|FQ466923.1|FQ466923
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352763933|gb|FQ465383.1|FQ465383
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351047302|gb|FQ454913.1|FQ454913
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCCG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351055347|gb|FQ441945.1|FQ441945
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352769825|gb|FQ468753.1|FQ468753
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351019898|gb|FQ439715.1|FQ439715
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|77587229|gb|DV222748.1|DV222748
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|161712389|gb|FC061694.1|FC061694
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352777639|gb|FQ466692.1|FQ466692
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352768049|gb|FQ467448.1|FQ467448
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351056118|gb|FQ453580.1|FQ453580
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352768397|gb|FQ469573.1|FQ469573
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351016119|gb|FQ432074.1|FQ432074
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351043324|gb|FQ451376.1|FQ451376
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351016022|gb|FQ431977.1|FQ431977
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|71873314|gb|DT022369.1|DT022369
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351032857|gb|FQ461746.1|FQ461746
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|110425826|gb|EC992219.1|EC992219
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351044375|gb|FQ452927.1|FQ452927
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352790248|gb|FQ481447.1|FQ481447
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|161718844|gb|FC066359.1|FC066359
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA