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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCCTGCCGGATCTCATGGCCAGTCTTTAGTCCTTGAAATCATCATCACCTTCCTACTCATGTTCGTCATCTCCGGCGTTGCCACCGATAGTAGAGCGgtatccaatacactcgcttctttcgatgtacattgttaatctattatctaacaacttaagttttaaggttttagtcttttttttttatgcag

Basic information

species Vitis vinifera
transcript Vv14s0006g01540.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g01540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g13870.1 (Oryza sativa), 5'ss of exon 2
TGTTCCTGCCGGATCTCATGGCCAGTCTTTAGTCCTTGAAATCATCATCACCTTCCTACTCATGTTCGTCATCTCCGGCGTTGCCACCGATAGTAGAGC-----Ggtatccaataca--ctcgcttctttcgatgtacattgttaatctattatctaacaacttaagttttaaggttttagtcttttttttttatgcag------------------------------------------------------------------------------------
  | || ||||| ||  | |  |||||  | ||||| ||  ||||||||||||||   ||||||||||||||||||||||| |||||||| |   ||||     | || | |  ||    |   ||| ||  || ||  |  |   ||   ||  |||  |  ||  ||     ||||   | | | | |  | ||                                                                                       
GCTCCCCGCCGGCTCCGACGTGCAGTCGCTCGTCCTCGAGTTCATCATCACCTTCTACCTCATGTTCGTCATCTCCGGCGTCGCCACCGACAACCGAGCCgtaagctacctagcacgattttaattcatttaatttaattgctccctccgctaattaattatctagtttaattagtttctatatatctgtaatttgattgctccactaattaggatcgatttgatcctgattaatctgaaagttttgaagtgataattctgttgaccatatgcatggatgcag

upper sequence: Vv14s0006g01540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g11560.2 (Oryza sativa), 5'ss of exon 2
TGTTCCTGCCGGATCTCATGGCCAGTCTTTAGTCCTTGAAATCATCATCACCTTCCTACTCATGTTCGTCATCTCCGGCGTTGCCACCGATAGTAGAGCGgtatccaatacactcgcttctttcgatgtacattgttaatctattatctaacaac-ttaagttttaaggttttagtcttttttttttatgcag--------
 |  || ||||| ||  | |  |||||  | |   | ||  ||||||||||||||   |||||||||||| |||||||||| |||||||| |   |||| ||       |  ||  || |   | ||     || ||   |  ||  | |||    || | | |||    ||  |   | ||   |  | |          
GGCGCCGGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTgtgagtttgatcctt-ctccaaaccattcttgttcttgtacgttttccaaactgtgttcaatgttacctcttccgaactgttccctcgtactagtagtttt

upper sequence: Vv14s0006g01540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G041980_T06 (Zea mays), 5'ss of exon 2
TGTTCCTGCCGGATCTCATGGCCAGTCTTTAGTCCTTGAAATCATCATCACCTTCCTACTCATGTTCGTCATCTCCGGCGTTGCCACCGATAGTAGAGCGgtat-ccaatacactcgcttctttcgat-gtacatt-gttaatctattatctaacaacttaagttttaaggttttagtcttttttttttatgcag
  | ||  | || ||  | |  |||||  | ||| | || ||||||| ||| |||   ||||||||||||||||||||||| ||||| || |  ||||| |||   |  |     |  ||  || | | ||   || |||  | | || ||       | ||    || |   |  |  | | | |||   ||||
GCTGCCCACGGGCTCCGAGGTGCAGTCGCTCGTCATCGAGATCATCACCACATTCTACCTCATGTTCGTCATCTCCGGCGTCGCCACGGACAACAGAGCAgtaagtcgttgttgccattttgtttgtttgtttgtttgtttctttcttttccggtcgttcaacccgtacgtactgtgcatatatattt---gcag

upper sequence: Vv14s0006g01540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G041980_T05 (Zea mays), 5'ss of exon 2
-------------------------------TGTT-CCTGCCGGATCTCATGGCCAGTCTTTAGTCCTTGAAATCATCATCACCTTCCTACTCATGTTCGTCATCTCCGGCGTTGCCACCGATAGTAGAGCGgtat-ccaatacactcgcttctttcgat-gtacatt-gttaatctattatctaacaacttaagttttaaggttttagtcttttttttttatgcag
                                | | ||  | || ||  | |  |||||  | ||| | || ||||||| ||| |||   ||||||||||||||||||||||| ||||| || |  ||||| |||   |  |     |  ||  || | | ||   || |||  | | || ||       | ||    ||                           
TTCGGCGGCCGGCACGAGCACTTCCCCGGCACGCTGCCCACGGGCTCCGAGGTGCAGTCGCTCGTCATCGAGATCATCACCACATTCTACCTCATGTTCGtcatctccggcgtcgccacggacaacagagcagtaagtcgttgttgccattttgtttgtttgtttgtttgtttctttcttttccggtcgttcaacccgta---------------------------

upper sequence: Vv14s0006g01540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G37820.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTCCTGCCGGATCTCATGGCCAGTCTTTAGTCCTTGAAATCATCATCACCTTCCTACTCATGTTCGTCATCTCCGGCGTTGCCACCGATAGTAGAGCGgtatccaatacactcgcttctttcgatgtacattgttaatctattatctaacaacttaagttttaaggttttagtcttttttttttatgcag
   |||  | |  ||    || ||  |  ||||    || ||||| ||| | ||||| ||||||||||| ||||||||||||||||| |||||| | |||||    | |    ||  |   |   |  |   || ||    |   |  |   |  ||  |||  |  ||| |  | | |||| |||   |||
AACTCCAACTGATTCATCAGGACAAGCACTAGTAGCAGAGATCATTATCTCATTCCTCCTCATGTTCGTTATCTCCGGCGTTGCCACTGATAGTCGTGCGgt---tagtgttttcaatatctcaaacctttgtttttttcatggaagttcttatgtt--gttgaagtgttcttatatcttttcttttgacag

upper sequence: Vv14s0006g01540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G37810.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTCCTGCCGGATCTCATGGCCAGTCTTTAGTCCTTGAAATCATCATCACCTTCCTACTCATGTTCGTCATCTCCGGCGTTGCCACCGATAGTAGAGCGgtatccaatacactcgcttctttcgatgtacattgttaatctattatctaacaacttaagttttaaggttttagtcttttttttttatgcag------------
   ||| || |  || |  |  |   |  | |||   |||||||| ||| | ||||| ||||||||||| ||||| || ||||||||||||| | | |||||    ||     ||   |  || |||    ||   | |  |   | || ||   ||| | |    ||| | | |     ||  | ||| ||            
GACTCCAGCTGATTCGCCAGCACGAGCGCTCGTCGCAGAAATCATTATCTCATTCCTCCTCATGTTCGTTATCTCTGGAGTTGCCACCGATAATCGTGCGgttagtaaattcttcatattgttagataattataactgaaatggaagcttac---ttatggtc-gtggtataattaaaacttaataatggagaaatagagaact