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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGAAAAATGGATAGCCGACTCAGATGTGATTGCTCAGTCCTTGGAAGAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttttcagttacttgttgctatgaaatctttttagacatgaaagttttcaacttatagatggacataaaaaaggttgggtgcctacaggcctgt...

Basic information

species Vitis vinifera
transcript Vv14s0006g00630.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110719968|gb|EE095537.1|EE095537
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|349817724|gb|FQ407713.1|FQ407713
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCTCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|33402764|gb|CF208391.1|CF208391
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|26265541|gb|CA816604.1|CA816604
EST:     GAAAAGTACCCAGATCCCCCTT-GGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|351024071|gb|FQ423494.1|FQ423494
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|33404427|gb|CF210054.1|CF210054
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|349826855|gb|FQ418946.1|FQ418946
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|110691855|gb|EE070437.1|EE070437
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|351046545|gb|FQ453161.1|FQ453161
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|294966595|gb|GW837730.1|GW837730
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|77577773|gb|DV217632.1|DV217632
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|26261684|gb|CA812747.1|CA812747
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCT
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|26262274|gb|CA813337.1|CA813337
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTG
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTG
EST: gi|37190755|gb|CF610104.1|CF610104
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAA
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAA
EST: gi|26263937|gb|CA815000.1|CA815000
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|349809187|gb|FQ398960.1|FQ398960
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|349827950|gb|FQ422818.1|FQ422818
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: gi|349814904|gb|FQ410127.1|FQ410127
EST:     GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT                         TGGGTCTAAGATCTTCTCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGATGAAAAATGGATAGCCGACTCAGATGTGATTGCTCAGTCCTTGGAAGAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttttcagttacttgttgctatgaaatctttttagacatgaaagttttcaacttatagatggacataaaaaaggttgggtgcctacaggcctgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa