Sequence
atgc intronic sequence ATGC exonic sequenceCTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgtatgtatctttgagttagaaaagtagtgactgttaagcaaataagtacattcccagtgagcctgatatgttgagtgttttgtataaaaatagaaagtca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g41590.1 (Oryza sativa), 5'ss of exon 3
CTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgtatgtatctttgagttagaaaagtagtgactgttaagcaaataagtacattcccagtg--agcctgatatgttgagtgttttgtataaaaatagaaagtca-
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ACTGCTGAAAGGTCGTAATGCATGGTATGGGCAGAAATTAGCTAAGGGTGAACTGACTCTTGAAATGGGGGACAGTATCAAGGGCAAAGGGACTATCCAGgttggtgctaccttcttaatgatgtaaatctttccatacttctgggtgtgtttttggtgccgaatagccatgtgctaagatttgc-tgtgattttatctttag
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g71280.1 (Oryza sativa), 5'ss of exon 4
CTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgtatgtatctttgagttagaaaagtagtgactgttaagcaaataagtacattcccagtgagcctgat--atgttgagtgtt-----ttgtataaaaatagaaagtca-----------------------------------
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TCTCCTGAAAGGTCGCAATGCGTGGTATGGGCAAATGCTAGCGAAGGGAGAACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAGgt-tatctcataaaactactcat-tattttccccgaaagttatatgaattttgagcgtatttttgaagaatgctggaagtcaaaacttgca-aaagatatcacatcatcctggatataacctgttcacttttcactctacag
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g58740.2 (Oryza sativa), 5'ss of exon 3
CTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgtatgtatctttgagttaga----aaagtagtgactgttaagcaaataagtacattcccagtgagcctgatatgttgagtgttt---tgtataaaaatagaaagtca-
||| |||| |||||||||||||||||||| || || ||||| |||| ||||||| || || |||||||| ||||| || ||||| || | |||||||| || | | || | || || | | || |||| | | || | | ||||| | || || | | | | || | ||
ATTGCTGAAGGGTCGTAATGCATGGTATGGGCAGAAACTAGCTAAAGGTGAACTGACACTAGAGATGGGTGACAGCATAAAAGGCAAAGGAACCATTCAGgtttgcccttccgtcttggtttctgaaatatcaataactgaggaaatga-tgcaccttatgatggtctgatg-gccatgtacttaattttgttatcattttattccag
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G173195_T01 (Zea mays), 5'ss of exon 3
CTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgtatgt-------atctttgagttaga-aaagtagtgactgttaagcaaataagtacattcccagtga--gcctgatatgttgagtgttttgtataaaaatagaaagtca--
|| |||||||||| |||||||||||||| || ||||||||| | || ||||||| ||| |||||||| || |||||||||||||| |||| || ||||| ||| | | | || || || || | || | | | || | || | | || | | | || || ||| | ||
ACTGCTGAAAGGTCGCAATGCATGGTATGGGCAGAAGTTAGCTAAGGGAGAACTGACTCTAGAAATGGGGGACAGCATCAAGGGCAAAGGGACTATCCAGgtttgtgctgccaacccaccatttggacaatgtgaagtttgcttaaatgccaggtgccttttgcttaaacgcttaggctatatgctgattcttattcgtttctgtgatctag
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G090747_T02 (Zea mays), 5'ss of exon 4
CTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgtatgtatctttgagttagaaaagtagtgactgttaagcaaat---aagtacattcccag-tgagcctgatatgttgagtgttttgtataaaaatagaaagtca-
||||||||||||||||||||||||||||| || ||||||||| |||| ||| ||| | ||||||||||| || || || || || |||| ||||||||||| ||| | || | | || || | || | | | || || | ||| | || || ||| | | | | | | | |||
ATTGTTGAAAGGTCGTAATGCATGGTATGGGCAGAAGTTAGCTAAAGGTGAATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgcccttttaattttggtcgacaacgaaacttcaaagaactgcatgaatatgcctaaatgaatc--atgtgatgaat-tatcctgttgccgttccatttcag
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G155348_T01 (Zea mays), 5'ss of exon 4
CTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgtat--gtatctttgagttagaaaagtagtgactgttaagcaaataagtacattcccagtgagcctgatatgttgagtgttttgtataaaaatagaaagtca
| || |||||||| |||||||||||||| |||| | | || | || || |||||| ||| ||||||||||| |||||||| ||||| |||||||||||| | || | || | || || | | || | || | | | | | | | || | || | | | |
TCTCTTAAAAGGTCGCAATGCATGGTATGGGCAAATGCTTGCCAAGGGAGAGTTGAGTCCTGACATGGGTGATAGTATCAAGGGGAAGGGAATGATTCAGgtaatggaatgacttttttctttccattttgtcttgttttattctgagaagatgtcaaa-gctattatagtactacatccgttctcgaatatttgtcgccc-
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G20840.1 (Glycine max), 5'ss of exon 3
CTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgta---tgtatctttgagtt--agaaaagtagtgactgttaagcaaataagtacattcccagtgagcctgatatgttgagtgttttgtataaaaatagaaagtca
||||||||||||||||||||| |||||||| || ||||| || |||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||| |||| || | || | | | |||||| | | ||| | || | || | | || | | ||||| | |
CTTGTTGAAAGGTCGTAATGCGTGGTATGGACAGAAGTTGGCCAAAGGGGAATTGAGCCTTGAAATGGGTGACAGTATCAAGGGCAAGGGGATGATTCAGgtattttgtacattcaaatttcaacatgcttgtgact-tggggataatggttgtcttgctgtctgataagaaagaagaaagaattcgggcataaatatata----
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G01380.1 (Glycine max), 5'ss of exon 3
CTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgtatgtatctttgagttagaaaagtagtgactgttaagcaaataagtacattcccagtgagcctgat-----atgttgagtgttttgt-ataaaaatagaaagtca
|||||||||||||| |||||||||||||| |||||||| || ||||||| |||| |||||||||||||| ||||||||||||||||||| |||||||||| || || | | | || ||| | || | | | | | | ||| ||| | ||| || | |||||| | | | | |
GTTGTTGAAAGGTCGCAATGCATGGTATGGGCAAAAGTTGGCCAAAGGGGAGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAGgtatagattttgtggctct-----tgctgtctgattagaatttcattcaagtttttgtgttgctgcttatcaatgatgtatattttgttgtgcatgttgtag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33403903|gb|CF209530.1|CF209530EST: AACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAG GGAATCTCTGCCGTGAAAGCATTTTATGAGCTGTTAAGTCAATCTTGCTTG
genomic: AACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgtatgtatct ... tcatttgcagGGAATCTCTGCTGTGAAAGCATTTTATGAGCTGTTAAGTCAATCTTGCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgtatgtatctttgagttagaaaagtagtgactgttaagcaaataagtacattcccagtgagcctgatatgttgagtgttttgtataaaaatagaaagtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata