Sequence
atgc intronic sequence ATGC exonic sequenceAATTGCACCAAACCTACTTGCTTCTGGAGCTGATGAAGGCGAGATTTGCATTTGGGATTTGGCAGCACCTGCAGAACCTTCTCATTTTCCACCTCTCAAGgtacatagtcctcctctgatgcacaatttatttgaaaattatatcttccttctacaatgttttttaggaacttctcctctaagtattcataccaatctgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G01290.1 (Glycine max), 5'ss of exon 3
AATTGCACCAAACCTACTTGCTTCTGGAGCTGATGAAGGCGAGATTTGCATTTGGGATTTGGCAGCACCTGCAGAACCTTCTCATTTTCCACCTCTCAAGgtacatagtcctcctctgatgcacaatttatttgaaaattatatcttccttctacaatgttttttaggaacttctcctctaagtattcataccaatctgt-----------------------------------------
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CATTGCACCAAATCTTCTTGCATCTGGGGCTGAGGATGGTGAAATTTGCATATGGGATTTGGTCAATCCTTCAGAACCTACACATTTTCCACCGCTAAAGgtcagagattgttaccttgagtgtg---catgttacatacatttgcccctgctttgatggattaatatgccttaatcttcaaatatctgtctctgtaaattactaaattttacatagttagtgtatatgataatggtgcag
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G36050.2 (Glycine max), 5'ss of exon 3
AATTGCACCAAACCTACTTGCTTCTGGAGCTGATGAAGGCGAGATTTGCATTTGGGATTTGGCAGCACCTGCAGAACCTTCTCATTTTCCACCTCTCAAGgtacatagtcctcctctgatgcacaatttatttgaaaattatatcttccttctacaatgttttttaggaacttctcctctaagtattcataccaatctgt-----------------------------------------
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CATTGCACCAAATCTTCTTGCATCTGGGGCTGAGGATGGTGAAATTTGCATATGGGATTTGGTCAATCCTTCAGAACCTACACATTTTCCACCACTAAAGgtcagagattgttcccttgagtgtg---catgttacagacatttgcccctgctttgatggattaatatgttttaatcttcaaatatctgtctctgtaaattaataaatttaaaatatttagtgtatatgataatggtgcag
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G63460.1 (Arabidopsis thaliana), 5'ss of exon 3
AATTGCACCAAACCTACTTGCTTCTGGAGCTGATGAAGGCGAGATTTGCATTTGGGATTTGGCAGCACCTGCAGAACCTTCTCATTTTCCACCTCTCAAGgtacatagtcctcctctgatgcacaatttatttgaaaattatatcttcctt---ctacaatgttttttaggaacttctcctctaagta--ttcataccaatctgt-------
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TATCAGCTCAAATCTACTTGCTTCTGGGGCTGATGATGGTGAAATTTGCATTTGGGACTTATTAAAGCCTTCAGAGCCTTCTCATTTTCCACTGCTCAAGgtataccaccacttcttactagtcaacaaccttggtttttgtattaccttttactctcattattgctttggta-taaacccatgagtaactttatgcgagggtcttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34544619|gb|CF512851.1|CF512851EST: TTTGGGATTTGGCAGCACCTGCAGAACCTTCTCATTTTCCACCTCTCAAG GGTAGTGGATCTGCTAATCAAGGTGAAATTTCTTTCTTATCTTGGAATAGC
genomic: TTTGGGATTTGGCAGCACCTGCAGAACCTTCTCATTTTCCACCTCTCAAGgtacatagtc ... cttgatgcagGGTAGTGGATCTGCTAATCAAGGTGAAATTTCTTTCTTATCTTGGAATAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTGCACCAAACCTACTTGCTTCTGGAGCTGATGAAGGCGAGATTTGCATTTGGGATTTGGCAGCACCTGCAGAACCTTCTCATTTTCCACCTCTCAAGgtacatagtcctcctctgatgcacaatttatttgaaaattatatcttccttctacaatgttttttaggaacttctcctctaagtattcataccaatctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc