Sequence
atgc intronic sequence ATGC exonic sequenceCACATCTACCCTATATCTTCCTTCTTCTCAGTATCCTTGTCAACGTCCTGGAATGCCTTTCATCCATCCTCATGAACATGTTCACCAACCTTTTTCACAGgtatggaaaattttgaatatctttcccttcttaatatcattaaagattaagggccctgctgagttgcttgtagaggtgaggacctttatttttagtattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0106g00640.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G34810.3 (Glycine max), 5'ss of exon 3
--CA-CATCTACCCTATATCTTCCTTCTTCTCAGTATCCTTGTCAACGTCCTGGAATGCCTTTCATCCATCCTCATGAACATGTTCACCAACCTTTTTCACAGgtatggaaaattttgaatatctttcccttcttaatatcattaaagattaagggccctgctgagttgcttgtagaggtgaggacctttatttttagtattt-----------
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CTCATCATCAGCCATGTATCTGCATTCATCTCAGTATCCCTGTCAGCGCCCTGGAATGCCATTTATCCATC---ATGAACATGTTCACCAACCCTTTGCACAGgtataaacagctaccaagatct---ccattttgtgattgtttaagtctta------tactatgtt--ttaacaaggtccatagcttccctatcagtggcttaattgcttac
upper sequence: Vv13s0106g00640.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G32800.2 (Glycine max), 5'ss of exon 3
---CACATCTACCCTATATCTTCCTTCTTCTCAGTATCCTTGTCAACGTCCTGGAATGCCTTTCATCCATCCTCATGAACATGTTCACCAACCTTTTTCACAGgtatggaaaattttgaatatctttcccttcttaatatcattaaagattaa-gggccctgctgagttgcttg---tagaggtgaggacctttatttttagtattt
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CTCCTCATCAGCCATGTATCTGCATTCATCTCAGTATCCCTGTCAGCGCCCTGGAATGCCGTTTATACATC---ATGAACATGTTCACCAACCCTTTGCACAGgtattaacagctaccaagatctccattttgtgattgttctagtcttatactatgttttaacaaggtccatagcttccatgtcagtggcttaatgtcttgc----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71881313|gb|DT030368.1|DT030368EST: GAATGCCTTTCATCCATCCTCATGAACATGTTCACCAACCTTTTTCACAG TCTCATCAACAGCAACCTGATACAAGTTTTGGATTAGCCCGGCCCCGGTAA
genomic: GAATGCCTTTCATCCATCCTCATGAACATGTTCACCAACCTTTTTCACAGgtatggaaaa ... ctttatgcagTCTCATCAACAGCAACCTGATACAAGTTTTGGATTAGCCCGGCCCCGGTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACATCTACCCTATATCTTCCTTCTTCTCAGTATCCTTGTCAACGTCCTGGAATGCCTTTCATCCATCCTCATGAACATGTTCACCAACCTTTTTCACAGgtatggaaaattttgaatatctttcccttcttaatatcattaaagattaagggccctgctgagttgcttgtagaggtgaggacctttatttttagtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc