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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGATTCCCTCCTATACAGGCTAAAGAATTGCCTTACCTGGAATGTACAGTTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggtttgttccttgttttaatatttggaactcgcaatgcatgtaggttccatctattatactgtgttgatcagctgcctgatgaattatctcagcc...

Basic information

species Vitis vinifera
transcript Vv13s0101g00100.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0101g00100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os10g42250.2 (Oryza sativa), 5'ss of exon 3
TCGATTCCCTCCTATACAGGCTAAAGAATTGCCTTACCTGGAATGTACAGTTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggtttgttccttg-ttttaatatttggaactcgcaatgcatgtaggttccatctattatactgtgttgatcagctgcctgatgaattatctcagcc
 || || |||||||||||| | |||||| |||| ||  |||| |||||||| || || ||||| || ||||||||||  || ||| ||||||| |||||||||||    |   | ||| ||||| |  ||    | | |  | |   ||   |     || |  |                                    
CCGCTTTCCTCCTATACAGTCGAAAGAACTGCCGTATTTGGAGTGTACAGTATCTATACTGACCGAATATGAAACTGCACTTAACCACCTTGACTGGGAGgtatgcaactacacattggttttagtcgttctttcactctcttctaataatcttgtggtactgcag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34544770|gb|CF513002.1|CF513002
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|110411687|gb|EC977410.1|EC977410
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|110410525|gb|EC976208.1|EC976208
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|30305062|gb|CB981856.1|CB981856
EST:     TTTCCATTCTGTCTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|349827778|gb|FQ422646.1|FQ422646
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|110401758|gb|EC968377.1|EC968377
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|110422162|gb|EC988477.1|EC988477
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|110384273|gb|EC948699.1|EC948699
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|30305004|gb|CB981798.1|CB981798
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|26258672|gb|CA809735.1|CA809735
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ACTTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATAC
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagA-TTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATAC
EST: gi|110379714|gb|EC944932.1|EC944932
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|22011850|gb|BQ796884.1|BQ796884
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|110360228|gb|EC923056.1|EC923056
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|26267150|gb|CA818213.1|CA818213
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|26257860|gb|CA808923.1|CA808923
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ACTTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATAC
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagA-TTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATAC
EST: gi|110373876|gb|EC938294.1|EC938294
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|110390064|gb|EC954950.1|EC954950
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|34544852|gb|CF513084.1|CF513084
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTCCCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|110362338|gb|EC925866.1|EC925866
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|26258698|gb|CA809761.1|CA809761
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|26265055|gb|CA816118.1|CA816118
EST:     TGACTGATTATGAAACTGGGCTCAACTACCCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TGACTGATTATGAAACTGGGCTCAACTA-CCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|161713972|gb|FC063157.1|FC063157
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATT
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATT
EST: gi|26265515|gb|CA816578.1|CA816578
EST:     CTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|33408857|gb|CF214484.1|CF214484
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|26257886|gb|CA808949.1|CA808949
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|110358301|gb|EC922414.1|EC922414
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATGGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|33410301|gb|CF215928.1|CF215928
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|33410379|gb|CF216006.1|CF216006
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|294966108|gb|GW837475.1|GW837475
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAGCTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|110369937|gb|EC934110.1|EC934110
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|34549687|gb|CF517919.1|CF517919
EST:     TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
EST: gi|26267720|gb|CA818783.1|CA818783
EST:     CTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAG                         ATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA
genomic: TTTCCATTCTGACTGATTATGAAACTGGGCTCAACTACCTTGATTGGGAGgtatgggttt ... ctttttgcagATTGGAAAGCATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACA