Sequence
atgc intronic sequence ATGC exonic sequenceTGTTCAAAATGAAAAAATAATAAGGAAGTTCTATCCTGAGGAACATGGCCCTGTGACAAATGTTGATCCAATTGGCAACTCTCCTGTAATTATCAAGAGGgtaaagtttcttgttgctaggttacctactgatacctgattttatcttcaatggtgggccatttaattattgaaacatttatatcccttttatgctagtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G26610.1 (Glycine max), 5'ss of exon 4
TGTTCAAAATGAAAAAATAATAAGGAAGTTCTATCCTGAGGAACATGGCCCTGTGACAAATGTTGATCCAATTGGCAACTCTCCTGTAATTATCAAGAGGgtaaagtttcttgttgctaggttacctactgatacctgattttatcttcaatggtgggccatttaattattgaaacatttatatcccttttatgctagtt--
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TGATGAGAATGAAAAAATCATAAGGAAGTTTTATCCTGAGGAGCTGGGACCAGTTACAAATGTTGATCCAATTGGAAATTCGCCTGTAATTATAAGAAAGgtagaatttcttccacacctgttcttcatggttgaattgaataactttccatgtcc--ttattctggtcatgattattgtaaataattttattggttactgg
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G37490.2 (Glycine max), 5'ss of exon 4
TGTTCAAAATGAAAAAATAATAAGGAAGTTCTATCCTGAGGAACATGGCCCTGTGACAAATGTTGATCCAATTGGCAACTCTCCTGTAATTATCAAGAGGgtaaagtttcttgttgctaggttacctactgatacctgattttatcttcaatgg--tgggccatttaattattgaaacat-ttatatcccttttatgctagtt
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TGATCAGAACGAAAAGACCATAAGGAAGTTTTATCCTGAGGAGCTGGGGCCAGTTACAAATGTTGATCCAATTGGAAATTCTCCTGTAATTATAAGAAAGgtagaatttcttcctcaccagttcttgatggctgaattgaataattttccatgtccttattcttgtcatgattattgtagatttcatcatcattgtgttg---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30128013|gb|CB913352.1|CB913352EST: CTGTGACAAATGTTGATCCAATTGGCAACTCTCCTGTAATTATCAAGAGG GAGTTGTTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATG
genomic: CTGTGACAAATGTTGATCCAATTGGCAACTCTCCTGTAATTATCAAGAGGgtaaagtttc ... tcccgtgcagGAGTTGTTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTCAAAATGAAAAAATAATAAGGAAGTTCTATCCTGAGGAACATGGCCCTGTGACAAATGTTGATCCAATTGGCAACTCTCCTGTAATTATCAAGAGGgtaaagtttcttgttgctaggttacctactgatacctgattttatcttcaatggtgggccatttaattattgaaacatttatatcccttttatgctagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa