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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCTTTATCCGTGACTTTATACCTTCTGGTATTGCTTTCCTTTTGAAGGGAGAATATGATATTGTTCGAAACTTCATCCTTCACACACTTCAGTTGCAGgtaatttaacagttctgattatgttgaccatttaagtttagcaaccaattgtgtgcagaatttcttgtcatagttaatttttttattccatttatttatt...

Basic information

species Vitis vinifera
transcript Vv13s0074g00720.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G31920.1 (Glycine max), 5'ss of exon 1
AGTCTTTATCCGTGACTTTATACCTTCTGGTATTGCTTTCCTTTTGAAGGGAGAATATGATATTGTTCGAAACTTCATCCTTCACACACTTCAGTTGCAGgtaatttaacag--ttctgattatgttg---accatttaagtttagcaaccaattgtgtgcagaatttcttgtcatagttaatttttttattccatttatttatt
 |||||||| ||||| || || |||||||| ||||| ||||| |||||||| || |||||||||||||| || || |||||| | ||||||||||||||||||||||    |  |  ||||  | |     | ||| |     || || | || | ||   | || ||  |  | ||  |   ||   |||   || ||||| | 
GGTCTTTATTCGTGATTTCATTCCTTCTGGAATTGCCTTCCTATTGAAGGGGGAGTATGATATTGTTCGGAATTTTATCCTTTATACACTTCAGTTGCAGgtaatttcttggaatcttgatcttataacacaacatgtgccggtaacagcaaaatttg-atacaacttggttacttacatgccttagatat---atatattttt-

upper sequence: Vv13s0074g00720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G15220.1 (Glycine max), 5'ss of exon 2
AGTCTTTATCCGTGACTTTATACCTTCTGGTATTGCTTTCCTTTTGAAGGGAGAATATGATATTGTTCGAAACTTCATCCTTCACACACTTCAGTTGCAGgtaatttaacagttctgattatgttgaccatttaagtttagcaaccaattgtgtgcagaat--ttcttgtcata-gtta-atttttttattccatttatttatt
 |||||||| ||||| || || |||||||| ||||| ||||| |||||||| || |||||||||||||| || || |||||| | |||||||||||||||||||| |    ||  | || |    |    ||   ||     ||  | |||  | ||   |  |  ||  |||  |||| || | | ||||    || || |  
GGTCTTTATTCGTGATTTCATTCCTTCTGGAATTGCCTTCCTATTGAAGGGGGAGTATGATATTGTTCGGAATTTTATCCTTTATACACTTCAGTTGCAGgtaatgtcttggtctt-ataacacagcatgttccggtaacagaaaaatttg-atacaacctggtcatttacatgcgttagatatatatattttcatttttaa--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110732966|gb|EE108716.1|EE108716
EST:     ACTTCATCCTTCACACACTTCAGTTGCAG                         AGCTGGGAGAAGACAATGGACTGTCATAGTCCTGGTCAAGGGTTGATGCCT
genomic: ACTTCATCCTTCACACACTTCAGTTGCAGgtaatttaac ... catcctgcagAGCTGGGAGAAGACAATGGACTGTCATAGTCCTGGTCAAGGGTTGATGCCT