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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACAGTTGGGCATGTGGCACATGGGAAGTCCACAGTTGTAAAAGCCATATCTGGTGTTCAGgttatattttgcttcttgtttgcatttgaatatttaatactgcttgttattagttttcatttctttagaagccttgagtataaatttgtactgtcacatt...

Basic information

species Vitis vinifera
transcript Vv13s0074g00310.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g41400.1 (Oryza sativa), 5'ss of exon 3
GCACAGTTGGGCATGTGGCACATGGGAAGTCCACAGTTGTAAAAGCCATATCTGGTGTTCAGgttatattttgcttcttgtttgcatttgaatatttaatactgcttgttattagttttcatttctttagaagccttgagtataaatttgtactgtcacatt--
| ||  ||||||||||||| ||||| |||||||| ||||| ||||| |||||||| |||||||| ||| ||    | ||   |   |     | |||   | || |   |  |||  |   | | |     ||  ||   | | |  ||   | || || ||  
GTACCATTGGGCATGTGGCCCATGGAAAGTCCACCGTTGTGAAAGCTATATCTGGAGTTCAGgt-ataattcatatatttcattattgcacttctttccaagtgatgaat-ctagactctgtgtatacctgagaattatatctcacgtttatcagtaacttttc

upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g07740.1 (Oryza sativa), 5'ss of exon 3
GCACAGTTGGGCATGTGGCACATGGGAAGTCCACAGTTGTAAAAGCCATATCTGGTGTTCAGgttatattt-tgcttcttgtttgcatttgaatatttaatactgcttgttattagtttt-catttctttagaagccttgagtataaatttgtactgtcacatt
| ||  | ||||||||||| ||||| |||||||| ||||| || || |||||||| ||||||||  ||||  ||  | || ||  |||  |  | |||   | || |   | | |  | | | | |   |   | |  ||  |   | ||  |  |  |   | 
GTACCATAGGGCATGTGGCCCATGGAAAGTCCACTGTTGTGAAGGCTATATCTGGAGTTCAGgtattattaatgtattttattatcat--gcttctttccgagtgatgaatctgaactctgcgtatacctgacaactatgtatcacatttattggtaacctgtg

upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G107654_T01 (Zea mays), 5'ss of exon 3
GCACAGTTGGGCATGTGGCACATGGGAAGTCCACAGTTGTAAAAGCCATATCTGGTGTTCAGgttatattt-tgcttcttgtttgcatttgaatatttaatactgcttgttattagttttcatttctttagaagccttgagtataaatttgtactgtcacatt--
| ||  |||| |||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||   |||  ||  |     |   || |   | |  || | ||     |   ||||||   ||   |   |   ||  || | |  ||    | ||   ||  
GTACCATTGGCCATGTGGCTCATGGAAAGTCCACTGTTGTTAAAGCTATATCTGGTGTTCAGgtgtgattcatgtattccagtgtaatatttgtttcaaacattg---aatccgagttttgtatttggtgtcaattttatgtgtcatctttctgtatcttttttt

upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G40750.1 (Glycine max), 5'ss of exon 3
GCACAGTTGGGCATGTGGCACATGGGAAGTCCACAGTTGTAAAAGCCATATCTGGTGTTCAGgttatattttgcttcttgtttgcatttgaatatttaatactgcttgttattagttttcatttctttagaagccttgagtataaatttgtac-tgtcacatt
||||  | || |||||||||||||| ||||| |||||||| ||||| ||||| || || |||||  |  ||||  | ||  |    | |       ||    ||   ||  ||||| |  |  | | ||   |   |  |||     ||| || ||      |
GCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAGgtattcctttgtctttttctcttctgttcgggagtagggatgagggt-gttagtgtgtagctatatattggatatatgtaatcccttgaacatggggttct

upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S207_94V6.1 (Physcomitrella patens), 5'ss of exon 2
GCACAGTTGGGCATGTGGCACATGGGAAGTCCACAGTTGTAAAAGCCATATCTGGTGTTCAGgttatattttgcttcttgtttgcatttgaatatttaata-ctgcttgttattagttttcatttctttagaagccttgagtataaatttgtactgtcacatt----------------------------------------------------------------------------------
| ||| |||| |||||||| || |||||||| ||||| || || |||||||||||||| |||||   |||| | |||| ||| |  | | | | ||   |  |||   |   ||  ||||  | |  |||      || | | ||  ||| | || |  | ||                                                                                  
GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATATCTGGTGTGCAGgtatgatttaggttctcgttggtttattatttttctttctctgggcggccttcatttttttcttctta----tttttattttatttttttccttttccttttggaagttggttgattttagaaatggtgagaatcggcttttacgtttttgagtaaattctgttgtgctcttcttcggagcag