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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACAGCTTATGTGAAGTTAGAACGCATTGTGCTTGATCAATTGGATCACCCTGGCATTGTGCGATTATTTTTTACATTTCAAGATACCTTTTCTCTGTgtaggtattcttggttaaaatctggtcagaagtttaatattctccattctttctgtctccaattttcctcttgcaccatgctctctcccatgcttgttttcctttatcatatttggttatttttttacaatttgctttatcatttgacatgggtcccttctgtggattttgaag

Basic information

species Vitis vinifera
transcript Vv13s0074g00100.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 2
AAAACAGCTTATGTGAAGTTAGAACGCATTGTGCTTGATCAATTGGATCACCCTGGCATTGTGCGATTATTTTTTACATTTCAAGATACCTTTTCTCTGTgtaggtattcttggttaaaatctggtcagaagtttaat-attctccattctttctgtctccaattttcctcttgcaccatgctctctcccatgcttgttttcctttatcatatttggttatttttttacaatttgctttatcatttgacatgggtcccttctgtggattttgaag
|||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||| |||| ||| |||||||||||  | |||||||| |||| |||||| | | |  | | |      |   ||  | || |||     |     ||||  ||     |    | | | ||| |  | ||  ||||||| ||    |  | | |  |||||||      ||||  |||  | |||  | |   |  | || ||| |        
AAAACAGCTTATGTGAAGTTGGAACGCATTGTGCTAGATCAATTGGATCATCCAGGCATTGTGCGGTTATATTTCACATTTCAAGACTCATTTTCTCTATgtaagtattcgtaggtgtattttacctttacacttgcttatgctctgacttactcctctctgataccttttcaactcta-gcttttgctcac-cttgtttgccaagttggtttatatttattttgacgttattt--tttcccctttttctt---ttacatcggtgaag-------

upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 2
AAAACAGCTTATGTGAAGTTAGAACGCATTGTGCTTGATCAATTGGATCACCCTGGCATTGTGCGATTATTTTTTACATTTCAAGATACCTTTTCTCTGTgtaggtattcttggttaaaatctggtcagaagtttaat-attctccattctttctgtctccaattttcctcttgcaccatgctctctcccatgcttgttttcctttatcatatttggttatttttttacaatttgctttatcatttgacatgggtcccttctgtggattttgaag
|||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||| |||| ||| |||||||||||  | |||||||| |||| |||||| ||| |  |   |      |   ||  | ||  ||     |     ||||  ||   |||  |  ||  | |  | | |    || |||| ||    |  | | |  |||||||   |  ||||  |||  | |||  | |   |  | || ||| |        
AAAACAGCTTATGTGAAGTTGGAACGCATTGTGCTAGATCAATTGGATCATCCAGGCATTGTGCGGTTATATTTCACATTTCAAGACTCATTTTCTCTATgtaagtattcctggatgtatgttatctttacacttgcttatggtctgacttactcctctctgata--ccttctcaactcttccttttgctcccctcgtttgccaagttggtttatatttattttgacattattt-ttttccctttttcctt---ttacatcggtgaag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717324|gb|FC068850.1|FC068850
EST:     CCCTGGCATTGTGCGATTATTTTTTACATTTCAAGATACCTTTTCTCTGT                         ATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCA
genomic: CCCTGGCATTGTGCGATTATTTTTTACATTTCAAGATACCTTTTCTCTGTgtaggtattc ... gattttgaagATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCA