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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAGgtgagaacataattgaagatttgtccacacccttttgatacaattgaattcttcacattcagaataaatgaatggctcgttgattcactttctgatctgagaatggttaatgggtattgatcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03480.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03480.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 5'ss of exon 4
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAGgtgagaacataattgaagatttgtccacacccttttgatacaattgaattcttcacattcagaataaatgaatggctcgttgattcactttctgatctgagaatggttaatgggtattgatcag
|  ||  | ||  | || ||||| ||||||||||||||||| ||||||||| | ||| | ||||| | ||||||||   | ||||  |  | ||  |    ||  ||  |  |  | |  || |   | | |       ||        |   || | | | |  ||||   || |||                 
GGATCATCTTCATTGAAGGACATACCAGTTGTGATCATGTCTTCTGAGAATGTGCCTGCAAGGATCAACAGgtgagctgaaaattcta--tctgagc-tgtccccttattttagctta--tcctggaaattattgctgctggtccatgaggc-atactcctacaaatctaccaa-ggt-----------------

upper sequence: Vv13s0067g03480.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G21650.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAGgtgagaaca--taattgaagatttgtccacacccttttgatacaattgaattcttc-acattcagaataaatgaatggctcgttgattcactttctgatctgagaatggttaat----gggtattgatcag----------------------------------------------------
|| |||| ||||||||||||||| ||||| ||||| |||||||| |||||| ||||  | ||||||| |||||||| | |  ||  |  |  | | ||   |  |   |   | ||   |||| ||  | |  || ||||||  ||||     ||        | |  | |  |   | |  |||       | | |||                                                       
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAGgtgaggaaaattacctccaattatatcaggaatccaatacaataaaaaaattattagagacccaaaataaa-aaatgatcatttatgagggatccaaaacatattttagccaattcaaaaatttggattgcatccatgactgaacttcaaatctaacaagacattcatttttgtttgtaccag

upper sequence: Vv13s0067g03480.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAGgtgagaacat--aattgaagattt---gtcca-cacccttttgatacaattgaattcttcacattcagaataaatgaatggctcgt-tgattcactttctgatctgagaatggttaatgggtattgatcag
|| |||| |||||||||| |||| ||||||||||| |||||||| |||||| | || || ||||| | ||||||||   ||  |||   | |       |||| ||||    | ||    ||| |   |||| ||||| |    | ||  |  ||   ||  | | ||||                                
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaattgaatcctataaccccaatccaacaccaacctaattattttgtaaatttcaaattcacatattaggagggcatcacatggctaaatttca-------------------------------

upper sequence: Vv13s0067g03480.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G29250.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAGgtgag--------aacataatt---gaagatttgtccacacccttttga--tacaattgaatt-cttcacattcagaataaatgaatggctcgt-tgattcactttctgatctgagaatgg-ttaatgggtattg--atcag
|| |||| ||||||||||||||| ||||| ||||| |||||||| |||||| ||||  | ||||| | ||||||||        ||   ||||    ||  |||    |   |      |  || | |||  || ||||| ||||| ||    ||| ||  ||   ||| | |  ||   |||| | ||    || ||   | ||   |||||
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAGgtgagggaaattgaatccaattaccaaaattttaattatgtcaagacaaaatatatttgtttttcttcaaattcacaaattctgattgcatcacatgactgaacttgaaatctaacaagaccttcatttttgtttgtatcag

upper sequence: Vv13s0067g03480.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G37770.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAGgtgagaacataattgaagatttgtcca-cacccttttgatacaattgaattcttcacattcagaataaatgaatggctcgt-tgattcactttctgatctgagaatggttaatgggtattgatcag
|| |||| |||||||||| |||| ||||||||||| |||||||| |||||| | || || ||||| | |||||||| | ||  |  |       ||||  |||   || ||    ||||| | |||| ||||| |    |||   |  ||   ||  | | |||     || | |                      
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagga-atcctaaactcccaatccaataccaacttaattattttgaaattttcaaattcacatattatgggggcatcacatggctaaattt---gactaaca----------------------