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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtaagaacaatattgaagacttatccattttttccttctgatacaattcaattcctcacattagaaagaaatgaaagtttgttgattcactttctaatatgagaatggttaatgggtattgatcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03450.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03450.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 5'ss of exon 4
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtaagaacaatattgaagacttatccattttttccttctgatacaattcaattcctcacattagaaagaaatgaaagtttgttgattcactttctaatatgagaatggttaatgggtattgatcag
|  ||  | ||  | || ||||| ||||||||||||||||| ||||||||| | ||| | ||||| ||||||| ||   || |||       ||||     | |||   |  |  |  | |  ||||   | |         ||     |     || | | | | ||| |   || |||                 
GGATCATCTTCATTGAAGGACATACCAGTTGTGATCATGTCTTCTGAGAATGTGCCTGCAAGGATCAACAGgtgagctgaaaatt------ctatctgagctgtccccttattttagctta--tcctggaaattattgctgctggtccatgaggcatactcctacaaatctaccaa-ggt-----------------

upper sequence: Vv13s0067g03450.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G21650.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtaagaacaatattgaagacttat-ccattttttccttctgatacaa------ttcaattcctcacattagaaagaa------atgaaagtttgttgattcacttt--ctaatatgagaatggttaatgggtat-tgatcag----------------------------------------
|| |||| ||||||||||||||| ||||| ||||| |||||||| |||||| ||||  | ||||||||||||| || | |||       | ||||  ||    | |  |   ||| ||      ||  |  ||  | || | |||  |      ||||  | |     |   | |||  | |||   | |||    | ||  |   |||                                            
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAGgtgaggaaaattacctccaattatatcaggaatccaatacaataaaaaaattattagagacccaaaataaaaaatgatcatttatgagggatccaaaacatattttagccaattcaaaaatttggattgcatccatgactgaacttcaaatctaacaagacattcatttttgtttgtaccag

upper sequence: Vv13s0067g03450.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtaagaacaatattgaagact-tatccattttttccttctgatacaattcaattcctcacattagaaagaaatgaaagtttgttgattcactttctaatatgagaatggttaatgggtattgatcag
|| |||| |||||||||| |||| ||||||||||| |||||||| |||||| | || || ||||| ||||||| ||   |   |||||  || || ||    |      |  |   ||||   ||    |  | | |   | ||   ||   |      ||      ||| | |                        
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaa---ttgaatcctataaccccaatccaacaccaacctaattattttgtaaatttcaaattcacatattaggagggcatcacatggctaaatttca------------------------

upper sequence: Vv13s0067g03450.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G29250.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtaagaacaatattgaagacttatccattttttccttctg---atacaattca-attcctcacattagaaagaaatgaaagtttgttgattcactttctaatatgagaatggttaatgggtattgatcag------------
|| |||| ||||||||||||||| ||||| ||||| |||||||| |||||| ||||  | ||||| ||||||| ||   |||       | ||| | |  ||||  || ||   | ||||   | |||  |     |  |||   |  ||   |  |||  |||| |      |   |||   | |   |   || ||               
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAGgtgagggaaattgaatccaattaccaaaattttaattatgtcaagacaaaatatatttgtttttcttcaaattcacaaattctgattgcatcacatgactgaacttgaaatctaacaagaccttcatttttgtttgtatcag

upper sequence: Vv13s0067g03450.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G37770.1 (Glycine max), 5'ss of exon 4
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtaagaa----caatattgaagact--tatccattttttccttctgatacaattcaattcctcacattagaaagaaatgaaagtttgttgattcactttctaatatgagaatggttaatgggtattgatcag
|| |||| |||||||||| |||| ||||||||||| |||||||| |||||| | || || ||||| ||||||| || |     ||  |   |  |   || | | ||  |  || ||| |   ||||| | | || ||||    |  || | |  | | | | |   |  |||| |                           
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgaggaatcctaaactcccaatccaataccaacttaattattttgaaatt-ttcaaattcacatattatgggggcatcaca--tggctaaatt--tgactaaca---------------------------