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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACTTCTTCCTCCTCCACATTGTGCTTCGAAGCTTATTACCCGTTCTGATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcccatatcagaattcctgttatccatctctctctcttttgtaatgattcaagaaacaaggtaaatataataaaataaaataaaataaatttg...

Basic information

species Vitis vinifera
transcript Vv13s0067g03360.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G36120.1 (Glycine max), 5'ss of exon 3
TCCACTTCTTCCTCCTCCACATTGTGCTTCGAAGCTTATTACCCGTTCTGATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcccatatcagaattcctgttatccatctctctctcttttgtaatgattcaagaaacaaggtaaatataataaaataaaataaaataaatttg
|||||||||||||||| |||| |||   || ||||| ||||| || || |||||||||||||| || || || ||| |||| |||||||||||||||| ||||||  ||   ||| |    |  ||| |  | || |||  || ||| ||||  ||  | ||    | |   ||| ||      |               
TCCACTTCTTCCTCCTGCACACTGTATGTCAAAGCTCATTACTCGGTCAGATGATACTGAAGCAGTAGTCAAAGAAAGGCTTCGTATATACAATGAAAAGgtatttgtct--tatta----ttttgtcaaacttc-ctcattcatttctaatagttttataattt-gttttctatcattcttgcag--------------

upper sequence: Vv13s0067g03360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G19880.1 (Glycine max), 5'ss of exon 3
TCCACTTCTTCCTCCTCCACATTGTGCTTCGAAGCTTATTACCCGTTCTGATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcccatatcagaattcctgttatccatctctctctcttttg--taatgattcaagaaacaaggtaaatataataaaataaaataaaataaatttg
||||||||||||||||    |||||   || ||||| ||||| || || |||||||||||||| || || || ||| |||| || |||||||||||||||||||| || |   || | | ||  | |||    |    ||       |         |  |    |    |   | || |   |||   ||   | | | ||
TCCACTTCTTCCTCCTGAGAATTGTATATCAAAGCTCATTACTCGATCAGATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgcacaattata-ttattattaattttgggacttcaggaagatcggctgcttgaatggcttcttttttgtagttgtatatt-tatctttattgtg

upper sequence: Vv13s0067g03360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G33390.1 (Glycine max), 5'ss of exon 3
TCCACTTCTTCCTCCTCCACATTGTGCTTCGAAGCTTATTACCCGTTCTGATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcccatatcagaattcctgttatccatctctctctcttttgtaatgattcaagaaacaaggtaaatataataaaataaaataaaataaatttg
|||||||||||||||| |||| |||   || ||||| ||| | || || |||||||||||| | || || || ||| |||| |||||||||||||||| ||||||  ||   | | |    |  ||| |  | || |||  || ||| ||||  ||  | ||      |   ||| ||      |               
TCCACTTCTTCCTCCTGCACACTGTATGTCAAAGCTCATTGCTCGGTCAGATGATACTGAATCAGTAGTCAAAGAAAGGCTTCGTATATACAATGAAAAGgtatttgtct--tctta----ttttgtcaaacttc-ctcattcatttctaatagttttataatttttttttctatcatccttgcag--------------

upper sequence: Vv13s0067g03360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G05530.1 (Glycine max), 5'ss of exon 3
TCCACTTCTTCCTCCTCCACATTGTGCTTCGAAGCTTATTACCCGTTCTGATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcccatatcagaattcctgttatccatctc--tctctcttttgtaatgattcaagaaacaaggtaaatataataaaataaaataaaataaatttg-
||||||||||||||||    |||||   || ||||| ||||| || || |||||||||||| | || || || ||| |||| || |||||||||||||||||||| || | |||| | | ||  | ||||  ||      |   |||  |||| |||          |      | | ||         || | | | | |  
TCCACTTCTTCCTCCTGAGAATTGTATGTCAAAGCTCATTACTCGATCAGATGATACTGAATCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgc-atattata-ttattattattaattaagggcagacttcagtaa-gatctggtgcttgaatggcttcttatttgtagttgtatatttattgtta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390107|gb|EC954996.1|EC954996
EST:     GGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: GGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|351039070|gb|FQ457745.1|FQ457745
EST:     ATGATACTGAAGCTGTTGTTAAG-AACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAG
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAG
EST: gi|349811291|gb|FQ406279.1|FQ406279
EST:     ATGATACTGAAGCTGTTGTTAANGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|351042081|gb|FQ456291.1|FQ456291
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGGAAGTTGCTAGAGTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGG-AAGTTGCTAGAGTT
EST: gi|351038944|gb|FQ457619.1|FQ457619
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTAACCTGTGGAGGACTTCTACCGCAGTCCGGGGAAG
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAG
EST: gi|71878429|gb|DT027484.1|DT027484
EST:     GCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: GCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|349821723|gb|FQ408161.1|FQ408161
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACT
EST: gi|351026159|gb|FQ428171.1|FQ428171
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGC
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGC
EST: gi|352772694|gb|FQ472737.1|FQ472737
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|22014507|gb|BQ799541.1|BQ799541
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|349809244|gb|FQ399018.1|FQ399018
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACTTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|34544146|gb|CF512378.1|CF512378
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|351033351|gb|FQ446583.1|FQ446583
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGGAAGTTGCTAGAGTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGG-AAGTTGCTAGAGTT
EST: gi|110382919|gb|EC947249.1|EC947249
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|110385590|gb|EC950132.1|EC950132
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|349811437|gb|FQ409433.1|FQ409433
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCCTACCGC-GTCGGGGGAAGT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTC-TACCGCAGTCGGGGGAAGT
EST: gi|110401329|gb|EC967937.1|EC967937
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|349811467|gb|FQ409463.1|FQ409463
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTTCCGGGGA-GTTTGCTAGAG
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGT-CGGGGGAAGTT-GCTAGAG
EST: gi|352777282|gb|FQ473916.1|FQ473916
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|352786628|gb|FQ479835.1|FQ479835
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACTATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGGAAGTTGCTAGAGTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGG-AAGTTGCTAGAGTT
EST: gi|349818660|gb|FQ403295.1|FQ403295
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGGAAGTTGCTAGAGTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGG-AAGTTGCTAGAGTT
EST: gi|110419722|gb|EC985971.1|EC985971
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|349821231|gb|FQ404363.1|FQ404363
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGA
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGA
EST: gi|351031699|gb|FQ459956.1|FQ459956
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAAGGACT-CTACCGCAG
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGA-GGACTTCTACCGCAG
EST: gi|349813663|gb|FQ413897.1|FQ413897
EST:     ATGATACTGAAGCTGTTGTTAAAGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAG
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAG
EST: gi|351044818|gb|FQ449072.1|FQ449072
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCA
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCA
EST: gi|352781976|gb|FQ469274.1|FQ469274
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|351036476|gb|FQ457189.1|FQ457189
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|351045854|gb|FQ441039.1|FQ441039
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCA
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCA
EST: gi|71877647|gb|DT026702.1|DT026702
EST:     GCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: GCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|349821007|gb|FQ404260.1|FQ404260
EST:     ATGATACTGAAGCTGTTGTTGAGGAACGGCTCCCTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTA
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTA
EST: gi|349826777|gb|FQ418868.1|FQ418868
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACCATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|352798752|gb|FQ478387.1|FQ478387
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTAGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|351052139|gb|FQ450709.1|FQ450709
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGA
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGA
EST: gi|349807822|gb|FQ402223.1|FQ402223
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGGAAGTTGCTAGAGTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGG-AAGTTGCTAGAGTT
EST: gi|352795584|gb|FQ480172.1|FQ480172
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGGAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|351052923|gb|FQ453910.1|FQ453910
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTAGAGGACTTCTACCGCA
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCA
EST: gi|349807966|gb|FQ402357.1|FQ402357
EST:     ATGATACTGAAACTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGT
EST: gi|352781857|gb|FQ469155.1|FQ469155
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|351036761|gb|FQ457474.1|FQ457474
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTAAAAACAATGAAATG                         AGTTTACCTGTGGAGGAC
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGAC
EST: gi|351045592|gb|FQ440777.1|FQ440777
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCA
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCA
EST: gi|349820194|gb|FQ406870.1|FQ406870
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGT-GCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|349830927|gb|FQ418211.1|FQ418211
EST:     ATGATACTGAAGCTGTTGTTAAAGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTG
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTG
EST: gi|349809165|gb|FQ398906.1|FQ398906
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTTGGAGGACTTCTACCGCA
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGT-GGAGGACTTCTACCGCA
EST: gi|110382917|gb|EC947247.1|EC947247
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
EST: gi|351056586|gb|FQ442414.1|FQ442414
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAATCGGGGGAAGTTGCTAGAGTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTT
EST: gi|349815144|gb|FQ410367.1|FQ410367
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTC
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTC
EST: gi|349810804|gb|FQ403047.1|FQ403047
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGAAGGACTTCTACCGCAGCCGGGGGAAGTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTT
EST: gi|349818669|gb|FQ403503.1|FQ403503
EST:     TGAAACTGAAGCTGTTGGTTA-GGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCCTGTGGAGGACTTCTACCCCAGTCGGGGGGAAGT
genomic: TGATACTGAAGCTGTTG-TTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACC-TGTGGAGGACTTCTACCGCAGTCGGGGG-AAGT
EST: gi|34363775|gb|CF405360.1|CF405360
EST:     ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATG                         AGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT
genomic: ATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcc ... actcctacagAGTTTACCTGTGGAGGACTTCTACCGCAGTCGGGGGAAGTTGCTAGAGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCACTTCTTCCTCCTCCACATTGTGCTTCGAAGCTTATTACCCGTTCTGATGATACTGAAGCTGTTGTTAAGGAACGGCTCCGTATATACAATGAAATGgtattactcccatatcagaattcctgttatccatctctctctcttttgtaatgattcaagaaacaaggtaaatataataaaataaaataaaataaatttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa