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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGTTGCTAGCTGCACTAATATGTGAATACTTGGACTGGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtgacattttgactatttttctgttttcttcttcttcttcttttttgcaattagttttaaccactctgtttaattatccttttacatatttactgatgagtcaagttttattttttattttttcaaaatgcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03320.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G38790.2 (Glycine max), 5'ss of exon 3
GAAGGTTGCTAGCTGCACTAATATGTGAATACTTGGACTGGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtgacattttgactatttttctgttttcttcttcttcttcttttttgcaattagttttaaccactctgtttaattatccttttacatatttactgatgagtcaagttttattttttattttttcaaaatgcag
| ||  | ||  | ||  | |||||||||||| | |||||||| ||  | |  || ||   |||||||||| ||||||||||||||||||||||   ||| ||  |   | || || |    |  | |     ||| | || ||  ||  |||     | | | |||     || |    ||| ||  ||||  |  ||  ||||                        
GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTGgtaattaatga-atccttgtttttatttttccgtagtatctgcgttcctgttggctgttgctttctgttatttttttttcccgtcgtgaggcat-ttggctgaataaacat-ttttgcag--------------------

upper sequence: Vv13s0067g03320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G44070.1 (Glycine max), 5'ss of exon 3
GAAGGTTGCTAGCTGCACTAATATGTGAATACTTGGACTGGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtga--cattttgactatttttctgttttcttcttcttcttcttttttgcaattagttttaaccactctgtttaattatccttttacatatttactgatgagtcaagttttattttttattttttcaaaatgcag
| ||  | ||  | ||| | |||||||||||| | |||||||| ||  | |  || ||   |||||||||| ||||||||||||||||||||||   |||  | || |   ||||||||  |  | ||  | ||| | |||| ||    |  || |    | | | |||  ||    | | |   ||||   | ||| | ||  ||| |                      
GGAGACTTCTTACGGCAATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTGgtaattaatgaatccttgtttttatttttccatagtatttgtgttcctgttttctgttgct--ttctgttaatttttttt--ttccgttgtgaggcatttg--gctgaataaacatttttgcag------------------

upper sequence: Vv13s0067g03320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G38790.4 (Glycine max), 5'ss of exon 3
GAAGGTTGCTAGCTGCACTAATATGTGAATACTTGGACTGGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtgacattttgactatttttctgttttcttcttcttcttcttttttgcaattagttttaaccactctgtttaattatccttttacatatttactgatgagtcaagttttattttttattttttcaaaatgcag
| ||  | ||  | ||  | |||||||||||| | |||||||| ||  | |  || ||   |||||||||| ||||||||||||||||||||||   ||| ||  |   | || || |    |  | |     ||| | || ||  ||  |||     | | | |||     || |   |   ||||   | ||| | ||  ||| |     |                
GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTGgtaattaatga-atccttgtttttatttttccgtagtatctgcgttcctgttggctgttgctttctgttatttttttttcccgtcgtg--aggcatttg--gctgaataaacatttttgcaggag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34416831|gb|CF415585.1|CF415585
EST:     TTTATATTCCGGAATGT-ATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: TTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|110423901|gb|EC990254.1|EC990254
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|110699314|gb|EE076202.1|EE076202
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|110726136|gb|EE101653.1|EE101653
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|351043024|gb|FQ443866.1|FQ443866
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|110730208|gb|EE107028.1|EE107028
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|351029495|gb|FQ436889.1|FQ436889
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|349829621|gb|FQ421139.1|FQ421139
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|110410730|gb|EC976422.1|EC976422
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|110732400|gb|EE107653.1|EE107653
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|349827978|gb|FQ422846.1|FQ422846
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|87585501|gb|DY474192.1|DY474192
EST:     AATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: AATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|30301939|gb|CB978733.1|CB978733
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|110685295|gb|EE063554.1|EE063554
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|349825323|gb|FQ418055.1|FQ418055
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|110726723|gb|EE102752.1|EE102752
EST:     ATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: ATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|349817511|gb|FQ407301.1|FQ407301
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|18458749|gb|BM437027.1|BM437027
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|110381982|gb|EC938169.1|EC938169
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|30301871|gb|CB978665.1|CB978665
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|351014234|gb|FQ434823.1|FQ434823
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|351016330|gb|FQ446190.1|FQ446190
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|110727163|gb|EE103612.1|EE103612
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|56409315|gb|CX017567.1|CX017567
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|26265335|gb|CA816398.1|CA816398
EST:     TGAACCACACATCAAAAGTTTATATTCCTGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: TGAACCACACATCAAAAGTTTATATTCC-GGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|349827894|gb|FQ422762.1|FQ422762
EST:     GGGCACAACTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|294965188|gb|GW837019.1|GW837019
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGGAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|56409393|gb|CX017645.1|CX017645
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|110710077|gb|EE086097.1|EE086097
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
EST: gi|349824073|gb|FQ417460.1|FQ417460
EST:     GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTG                         CAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA
genomic: GGGCACAATTGAACCACACATCAAAAGTTTATATTCCGGAATGTAATTTGgtaatctgtg ... caaaatgcagCAAAAGGATTTCTGGAAAGCTGAATTGAAGGAATTTAGTAGCAAGAATGGA