Sequence
atgc intronic sequence ATGC exonic sequenceGAGCTTGGAACCATTGGGGCGTTGAGTTTATCTGTGGTTTCGTCTGTGTCGATTGTGATTTGCAATAAAGCTCTCATTAGCTCATTGGGTTTCACTTTTGgtgagttgcagtatacacatacaatctgggtattatgtttatgttaatgatattcttactttttatgtgttcattaaattgttagttttcctagtttagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G14980.1 (Glycine max), 5'ss of exon 2
GAGCTTGGAACCATTGGGGCGTTGAGTTTATCTGTGGTTTCGTCTGTGTCGATTGTGATTTGCAATAAAGCTCTCATTAGCTCATTGGGTTTCACTTTTGgtgagttgcagtatacacatacaatctgggtattatg-tttatgttaatgatattcttactt-tttatgtgttcattaaattgttagttttcctagtttagt
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CAGCTGGGAACTGTTGGCGCATTGAGTATGTCTGTGGTGTCGTCAGTGTCGATTGTGATTTGCAATAAGGCGTTGATGAGCTCACTGCATTTCATTTTTGgtaagtttttttaaacaatttagctattagcaaattgatatatgattaagaaatgacaagttatttgtgtgtctaatttttggtgactattacaagtgtg--
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G39920.4 (Glycine max), 5'ss of exon 2
GAGCTTGGAACCATTGGGGCGTTGAGTTTATCTGTGGTTTCGTCTGTGTCGATTGTGATTTGCAATAAAGCTCTCATTAGCTCATTGGGTTTCACTTTTGgtgagttgcagtatacacatacaatctgggtattatgtttatgttaatgatattcttactttttatgt-gttcattaaattgttagttttcctagtttagt---
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CAGCTTGGGACTGTGGGTGCGTTGACTCTTTCTGTGGTCTCATCTGTGTCCATTGTGATTTGCAATAAGGCGCTGATGAGTTCACTGCATTTCATTTTCGgtaact--caacttccccctttgaattg--tagcaagtttatactcttcttttgctttctatttttgccactcatttgtattttgtgtctttcatttgaatcat
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G14970.2 (Glycine max), 5'ss of exon 2
GAGCTTGGAACCATTGGGGCGTTGAGTTTATCTGTGGTTTCGTCTGTGTCGATTGTGATTTGCAATAAAGCTCTCATTAGCTCATTGGGTTTCACTTTTGgtgagttgcagtatacacatacaatctgggtattatgtttatgttaatgatatt-cttactttttatgtgttcattaaattgttagttttcctagtttagt--
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CAGCTTGGGACGGTGGGCGCGTTGACTCTTTCTGTGGTCTCATCTGTGTCCATTGTGATTTGCAATAAGGCGCTGATGAGTTCACTGCATTTCATTTTCGgtaacttaaacttccccctttggatc---gttgcaagtttatactattctttttgctttctaattttgccacccatttgtattttgtgtctttcatttcttccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110370848|gb|EC934415.1|EC934415EST: GATTGTGATTTGCAATAAAGCTCTCATTAGCTCATTGGGTTTCACTTTTG CTACTACATTGACAAGCTGGCATCTTCTGGTCACTTTCTGTTCTCTTCATG
genomic: GATTGTGATTTGCAATAAAGCTCTCATTAGCTCATTGGGTTTCACTTTTGgtgagttgca ... ctttgtacagCTACTACATTGACAAGCTGGCATCTTCTGGTCACTTTCTGTTCTCTTCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCTTGGAACCATTGGGGCGTTGAGTTTATCTGTGGTTTCGTCTGTGTCGATTGTGATTTGCAATAAAGCTCTCATTAGCTCATTGGGTTTCACTTTTGgtgagttgcagtatacacatacaatctgggtattatgtttatgttaatgatattcttactttttatgtgttcattaaattgttagttttcctagtttagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA